| Name | Title | Abstract | Project Type | Type of Presentation | Department | Link | Festival Year |
|---|---|---|---|---|---|---|---|
| Nassir Abou Ziki | A Bayesian Approach for Assessing the Performance of a Biometric Authentication Device |
When no successes are observed in n independent trials the usual statistical methods won't work to estimate the probability of success, p. Several techniques have been devised to give a reasonable upper bound for the probability p of a success. These include the Rule of Three which and the Bayesian Rule of Three. A similar problem arises when estimating the matching performance of a biometric authentication device (e.g. a fingerprint scanner). However, in this case, the encountered problem becomes even more complicated since p can vary from individual to individual and we have ni observations on an individual i. Our work focuses on developing other Bayesian approaches to the latter types of problems. We use a Beta-Binomial distribution to find a better reasonable upper bound on the probability p. We also test our models by estimating the probability of a failure of a biometric authentication device for simulated data. |
Senior Year Experience - Honors | Poster | Mathematics | view | 2012 |
| Nassir Abou Ziki | Building a Biologically-Inspired Electric Neuron |
Neuron modeling is an essential tool that provides a better understanding of the dynamics of the neuron. Also, Neuron modeling gives the opportunity to study a wide range of neural networks and give insight on their complicated structure and functionality. In this project we build an electric neuron circuit based on a design proposed by J. D. Sitt et al. Moreover, we carefully characterize the behavior of the neuron circuit as a function of its various inputs. We found that the constructed neuron circuit accurately models the opening and closing dynamics of the ion channels present in the cell membrane of a biological neuron. When tuned, the circuit generates a spiking pattern analogous to that of a spiking neuron. |
Senior Year Experience - Non Honors | Oral Presentation | Physics | view | 2012 |
| Katelyn Almon | The process of training a scat detection dog |
Domestic dogs (Canis familiaris) may be trained to detect the scent of scat of a species for conservation purposes. I trained a ball-obsessive pet Labrador Retriever to become a scat detection dog because dogs can be a useful non-invasive survey method for animal scat. I applied psychological principles of operant conditioning to train the dog to associate the smell of porcupine scat with a sitting notification behavior, and, in response, I offered a tennis ball reward. I tried five different training/reward methods to train the dog this chain of associations. The most successful method was to first train the dog indoors on scent boxes containing empty and scat-filled mason jars with a treat reward. Once the dog was reliably finding and sitting next to the mason jar containing scat, the training sequence was repeated outdoors and a tennis ball toy became the reward. After 86 training sessions and just under 30 hours of training over six months' time, the dog can reliably identify scat in a natural setting outdoors. |
Independent Study | Poster | Biology | view | 2012 |
| Josee Belanger | Risk Taking Behaviors in Sport and Daily Life |
Most research examining differences in risk taking among athletes and non-athletes in daily life has demonstrated that athletes take more risks than non-athletes, including drinking, smoking and sexual behaviors (e.g., Frye, Allen & Drinnon, 2010; Wetherill & Fromme, 2007). However, research has not yet examined if athletes’ attitudes towards risk taking are subject to change depending on the social context, but research has demonstrated athletes are more accepting of aggression and use lower levels of moral reasoning in sport than in daily life (Bredemeier & Shields, 1984; Gardner & Janelle, 2002). There were two main purposes to this study. First, to replicate past research we examined differences between athletes’ and non- athletes’ risk taking attitudes and behaviors in everyday life. The second was to extend past research by examining if athletes’ attitudes towards risk taking differ when engaged in their sport as compared to daily life. Participants in this study consisted of St. Lawrence University student non-athletes (N= 77) and athletes (N=186). They answered self-report questionnaires assessing participants’ beliefs about risk taking in general as well as for specific risky behaviors. Results showed no significant difference in general attitudes towards risk taking between athletes and non-athletes, but non-athletes did show greater use of alcohol and marijuana. As hypothesized, there were significant differences between athletes’ levels of risk taking in different contexts. Athletes reported a greater propensity for risk within the sport compared to daily life, suggesting that athletes’ beliefs about risk taking are dependent upon the social context. |
Senior Year Experience - Honors | Poster | Psychology | view | 2012 |
| Amanda Brewer | Identification and distribution of Cryptomonas symbionts from Fayetteville Green Lake, NY |
The aim of the study is to understand the distribution of the eukaryotic microorganisms found at different levels in the water column of Fayetteville Green Lake, located near Syracuse, New York. The Green Lake water column turns anaerobic at 20.5 meters depth and remains anaerobic at deeper depths. We have mapped the distribution of Cryptomonas, a unicellar photosynthetic protist, which lives in both aerobic and anaerobic depths in this environment. Cryptomonas cell densities are highest at 19.00m to 21.50m and many of the Cryptomonas cells contain DNA positive inclusions in their cytoplasm, as shown by DAPI staining. We used fluorescence in situ hybridization (FISH) with specific rRNA-targeted oligonucleotide probes to identify whether these inclusions are Bacteria or Archaea by means of epifluorescence microscopy. This technique allows us to analyze the putative symbionts found in this protist and to understand whether cells found in both aerobic and anaerobic portions of the lake contain symbionts or represent two different populations. |
Senior Year Experience - Non Honors | Poster | Biology | view | 2012 |
| Alyssa Brown | MICROSATELLITE ISOLATION AND CHARACTERIZATION FOR THE ASSESSMENT OF GENETIC DIVERSITY BETWEEN POPULATIONS OF COPTIS TRIFOLIA |
Microsatellites are highly beneficial in assessing the genetic diversity, relatedness and reproductive success within a population because of the abundance and distribution of microsatellite regions within a genome. We isolated microsatellite regions from the DNA of Coptis trifolia (C. trifolia) by attaching oligonucleotide probes and hybridizing magnetic beads to microsatellite regions in digested DNA. The repeat sequences of the resulting clones were characterized using DNA sequencing and primers were designed from the DNA sequences for use in analyzing genetic diversity of different populations. We isolated and characterized a total of 14 possible microsatellite loci, of which 13 are GA repeats and 1 is a TGTGAGA. We designed forward and reverse primers specific to the regions flanking the 14 microsatellite repeat loci to be used in future assessments of the genetic diversity between species populations through Polymerase Chain Reaction (PCR) amplification. |
Senior Year Experience - Honors | Poster | Biology | view | 2012 |
| Jeannine Condon | Quantifying the Effects of Different Carbohydrate Environments on Bacteriocin Production in Lactococcus lactis |
Bacteriocins are a protein based toxin produced by some bacteria which can inhibit growth of closely related bacterial strains. Bacteriocins are used in many commercial applications including fermented foods and many dairy products, where they act as natural preservatives and provide antimicrobial health benefits for the consumer. This project studies the bacteriocin production of the lactic acid bacterium, Lactococcus lactis, grown in the presence of sugars and artificial sweeteners commonly found in commercial yogurts. The effects of different carbohydrate environments can be observed by quantifying the active bacteriocin protein, nisin. This is done using assays designed to determine bacteriocin effectiveness for inhibiting the growth of Lactococcus sakei, a sensitive strain. Cell concentrations in a given culture are determined using diffusion assays and spectrophotometry. Bicinchoninic acid (BCA) assays and protein gels are used to quantify the amount of nisin produced when L. lactis is grown in the different carbohydrate environments. Preliminary results show that the presence of certain carbohydrates in the environment changes the quantity of nisin produced, effectively altering the antibiotic properties of the L. lactis. |
Senior Year Experience - Non Honors | Poster | Biology | view | 2012 |
| Jameson Cook | Construction of a Raman Spectrometer |
Raman spectroscopy is a method of analyzing a substance using a strong coherent light source, usually a laser, and a spectrometer to measure the energy of the inelasticly scattered photons. As incident photons strike a material, most of them are scattered with their energy unchanged; however some photons will gain or lose energy from the vibrational energy in the structure of the material. Substances that are Raman active have unique shifts in energy, allowing this technique identify unknown materials. We assembled a Raman spectrometer using a Horiba Triax 550 spectrometer, a 532nm diode-pumped laser, and an SBIG ST-7 astronomical CCD camera. Data acquisition and spectrometer control was accomplished using National Instruments LabView suite. We have successfully measured the Raman spectrum of a silicon wafer and found the characteristic peak at 520 cm^-1. |
Senior Year Experience - Non Honors | Poster | Physics | view | 2012 |
| Emma Coronado | XRD ANALYSIS OF SEDIMENT CORE MATERIAL AS A PROVENANCE INDICATOR OF NEOGLACIAL ACTIVITY IN A HIGH TROPICAL GLACIAL SETTING |
Tropical glaciers provide good proxies for understanding recent climate change due to their extreme sensitivity to climate fluctuation. X-Ray Diffractometry (XRD) of sediment-core samples from the high Andes of Peru resolves recent fluctuation of the Shirucocha glacier during the neoglaciation (3-5,000 yr BP). Samples were taken from Lago Shuirucocha, a high-altitude glacial lake, situated on the dry side of the Andes Mountains approximately 120km east of Lima, Peru. The geology of the area comprises mid- to high-grade metamorphic and igneous outcrops with Permian sandstone units outcropping on the east side of the lake. These differences in geology permit provenance studies of the sediments – were they glacially or fluvially derived? Through comparison of the clay-sized-fraction sediment from four sites from/around the lake, recent glacial activity can be resolved. To determine the mineralogy of the core sediments, interval samples of approximately 10 grams were prepared and run through XRD analysis. The use of the program PDXL allowed for mineral identification in each sample providing results of >75% bulk composition of two provenance settings: a) zeolites and feldspars from glacial origins and b) chlorite and quartz from fluvial origins. These indicator minerals suggest major shifts in sediment source and glacial activity stemming from an influx of Shuirucocha glacier influence around 3,000 14C years BP. The increase of glacial melt into the lake is noted in the Lago Shuirucocha hammer core. This change in provenance of sediment influx into Lago Shuirucocha helps resolve neoglacial activity of the Shuirucocha glacier. |
Senior Year Experience - Non Honors | Poster | Geology | view | 2012 |
| James Curro | Total Hockey Rating (THOR) |
Ratings of individual hockey players are difficult due to the fluid nature of the game. Unlike baseball and football there is no start and stop at plays making it hard to know what you are looking for when analyzing. Hockey is relatively low scoring compared to other similar games such as basketball which further adds to the difficulties for evaluating players. Recently there have been some attempts to get at the value of National Hockey League (NHL) skaters based upon scoring rates (Macdonald (2011)) or at the value of certain events that happen on the ice (Corsi & Fenwick) or the impact of other players that appear on the ice with a given player QualComp. We present a new comprehensive rating that accounts for each of these elements as well as the impact of non-shooting events such as turnovers and hits that occur when a given player is on the ice. The impact of each play is determined by net expected probability leading to a goal for a player’s team (or their opponent) in the subsequent 20 seconds. One desired outcome of this work is to provide a methodology that can quantify the impact of individual hockey players across positions (forwards and defenseman). |
Senior Year Experience - Honors | Poster | Mathematics | view | 2012 |
| Patrick Curry | Path Counting With Fibonacci, Pascal, and Python |
Consider a network consisting of a row of vertices and edges where each vertex is connected to the two vertices to its left and the two vertices to its right, to the extent possible. If we count the number of distinct paths from the starting vertex A to the ending vertex B when the network is n edges wide, we’ll find that it is the same as the n + 1st term in the Fibonacci sequence. In this paper we will explore this path counting problem and some of its interesting variations which include limiting the number of “large jumps” we can take from A to B and taking the original network and wrapping it around into a circle. After introducing the variations of the original path counting problem, we will look at how the solutions of the variations can be unexpectedly related to those of the original and to each other; e.g. the solution for circling the aforementioned circle network twice is always |
Course Project | Poster | Mathematics | view | 2012 |
| Stephanie Cutler | Assessing Value: Do Feelings Matter? |
Research has suggested that there are two ways in which people can assess value: either by relying on their feelings and emotions or by taking a more deliberate, calculative approach. Previous research has suggested that when people use calculations to assess value, that they are often sensitive to changes in scope (e.g., willing to pay more for a diamond that has twice the number of carats). However, when assigning value based on how they feel about a target, people may be insensitive to scope. In our first experiment participants were asked to freely estimate a price of 5 or 10 pre-owned music CDs. Some support was found for the assertion that calculation and negative feeling primes led to scope sensitivity, while positive feeling primes resulted in scope insensitivity. However, in a follow-up experiment, when provided with an upper limit of $50 on the price of CDs, neither calculation nor feeling primes led to scope sensitivity. Furthermore, no evidence of scope sensitivity emerged when participants were asked to estimate the amount they would be willing to donate to an animal shelter to save either 2 or 8 animals (for up to $200), or to a charity that would provide surgery to treat cleft palate in 1 or 6 children (for up to $200). Participants who scored higher on an empathy questionnaire, however, were found to be more likely to donate more money to both the animal shelter and the children’s charity. |
Senior Year Experience - Honors | Poster | Psychology | view | 2012 |
| Heather Cutler | HI Depletion in ZwCl 1400+0949 |
Fritz Zwicky first identified ZwCl 1400+0949 as a poor cluster of galaxies using the plates of the Palomar Observatory Sky Survey (Zwicky et al 1960-68). The region of sky in which it is found is included in the Arecibo Observatory ALFALFA survey that has provided higher sensitivity and resolution data on the neutral hydrogen (HI) content of galaxies. ALFALFA is a blind HI survey that uses the Arecibo L-band Feed Array to detect emissions at frequencies between 1225 and 1525 MHz, a range that includes the emission line of neutral hydrogen at 1420 MHz. Using HI data from the ALFALFA survey and optical data from the Sloan Digital Sky Survey (SDSS), we have identified 116 galaxies that appear as a group on the sky and in distance from us, as given by their redshifts, as members of ZwCl 1400. Interactions with other galaxies and the atmosphere of the cluster should deplete the HI gas in member galaxies. In an effort to determine whether or not ZwCl 1400 is a gravitationally bound cluster, we examine the deficiency of HI in these galaxies by comparing their HI content with that in isolated galaxies using data presented by other members of the ALFALFA team. This is a collaboration between faculty and undergraduate students from 18 institutions involved in the ALFALFA project exploring the properties of galaxy clusters surveyed. Zwicky, F., Herzog, K., Karpowicz, M., Kowal, C. T., and Wild, P. (1960-68), Catalogue of Galaxies and of Clusters of Galaxies (Cal. Tech: Pasadena) Vols 1-6 |
Senior Year Experience - Non Honors | Poster | Physics | view | 2012 |
| Dylan Cutler | Examining the Effects of Hesperetin on Melanoma Cells through Raman Spectroscopy |
Recent studies have suggested that the antioxidant properties of citrus flavonoids, found in fruits such as grapefruit and oranges, inhibit cancer cell proliferation and stimulate apoptosis. However, few studies have been conducted on the naturally occurring flavonoid hesperetin (3’, 5, 7-trihydroxy-4-methoxyflavanone). The purpose of this study was to determine whether hesperetin has a melanogenic effect on melanoma cells, and if this can be detected using Raman spectroscopy. B16 mouse melanoma cells were treated with hesperetin and imaged using a Raman spectrometer. We hypothesized that a comparison between the Raman spectra of treated melanoma cells and untreated melanoma cells would illustrate an increase in tyrosinase activity in the treated B16 mouse melanoma cells demonstrated by an increase in Raman signal. Therefore, this would indicate that hesperetin has melanogenic properties making it a strong candidate for skin cancer chemotherapy. |
Senior Year Experience - Non Honors | Poster | Physics | view | 2012 |
| Nicholas De Filippis | Biomass for Heat and Electricity at St. Lawrence University |
My project analyzes the potential for the application of biomass at St. Lawrence University. I analyzed the energy usage at St. Lawrence, the different available systems, potential fuels, and the environmental considerations. I also examined current biomass projects as part of determining the potential for biomass in the Northeast. From my research I determined that biomass had a lot of potential at SLU and that a stoker or fluidized bed boiler would be appropriate for SLU. This would have a great effect on the surrounding ecosystems. Best management practices would have to be set up in order to ensure that the effects on wildlife, such as habitat loss and death, are minimal. This shows us that there is a range of technologies that can be used at St. Lawrence University in order to reduce our carbon footprint. The final project document will be submitted to SLU’s Facilities Operations and to the Campus Committee for Sustainability and Carbon Neutrality for possible inclusion in SLU’s new Master Plan as the university moves towards carbon neutrality. |
Senior Year Experience - Non Honors | Poster | Biology | view | 2012 |
| Lillian Donahue | The Road to Kilimanjaro: Climate Change and its Impacts on the People of Kilimanjaro |
I had the amazing opportunity to travel to Kenya and Tanzania to climb Mt. Kilimanjaro and examine the direct impacts global climate on the people there. While poverty in African nations continues to cast a large shadow in the 21st century, expanding at alarming rates, climate change is the single largest factor contributing to already high levels of national poverty. Studies done by groups such as the IPCC and the Journal of American Science scientifically prove and show that Tanzania’s mean annual and average daily temperatures will rise between 2 to 4 degrees Celsius by 2075. While visiting the Kilimanjaro region I saw first hand and learned about the negative impacts of climate change, which have already occurred in Tanzania. The social, environmental and economic stability of the Kilimanjaro region is becoming compromised by the impact of climate change. I collected videos, voice recordings, photos and journal logs of a variety of opinions, experiences and thoughts about Kilimanjaro climate and its impact on them. I have put together a website called “The Road to Kilimanjaro” which is dedicated to further understanding and exploring the impacts I saw. Our actual journey to Kilimanjaro filled me with information and insight on everything from adoption, volunteer teaching, poaching, Chinese presence and government corruption. I have been examining climate change and its relation to the human development of the poor, which is the most compelling issue across Africa. I learned how the indigenous people have been directly and indirectly affected and how the government needs to step up and help their people with adapting to these changes. |
Course Project | Poster | Environmental Studies | view | 2012 |
| Kyle Donaldson | Fibonacci and Pascal |
There has always been a certain fascination with Fibonacci numbers. What is even more curious are some of the relationships this simple sequence shares with other mathematical constructs such as Pascal's triangle. If one were to add up the diagonals in Pascal's triangle, one would discover the Fibonacci numbers. How does this relationship come about and what is its significance? In this paper I will show that the number of paths through a certain network is given by the Fibonacci numbers and that grouping these paths can explain the aforementioned relationship. However, what would happen if one were to double all of the paths of such a Fibonacci network? Would the resulting "doubled" Fibonacci sequence maintain a similar relationship with Pascal's triangle? The primary goal of this project will be to understand and generalize the factors that lead to these relationships. Using different path counting techniques and processes, I will be able to explain how and why these relationships exist. |
Senior Year Experience - Non Honors | Poster | Mathematics | view | 2012 |
| Erin Dunn | Why does Threat Capture Attention? Surprisingly, Arousal and Valence are Non-Factors |
Attention is captured when we are faced with threatening stimuli. There are two theories for why threat captures attention. The evolutionary threat superiority theory claims that humans have evolved an efficient neural pathway for detecting threats which is particularly sensitive to ancient threats. The second theory maintains that the ontogenetic relevance of the threatening stimulus is just as important as its evolutionary status. According to this theory, both ancient and modern threats should be equally likely to capture attention. The current study measures the capture of attention using the Rapid Serial Visual Presentation task (RSVP). This procedure asks participants to identify stimuli which are rapidly presented in a sequence. The RSVP paradigm is used in this study to test the effects of threatening stimuli on the Attentional Blink - a reduced ability to identify a second target after having recognized a first target. A study conducted by a previous honors student using the Attentional Blink paradigm showed ancient (snakes and spiders) and modern (guns and syringes) threats to equally attenuate the attentional blink as opposed to non-threatening stimuli. The current study seeks to determine whether this difference is due to the threatening nature of the stimulus, or due to its emotional value. The results indicated that neither stimulus arousal, nor its emotional valence (pleasantness) reduced attentional blink beyond the reduction due to threat. Thus, we replicated the earlier result of attentional capture by threat, and we have ruled out that this reduction is due to stimulus arousal or valence. |
Senior Year Experience - Honors | Poster | Psychology | view | 2012 |
| Elisabeth Dwyer | Assay to Establish the Binding Affinity of Nogalamycin to Different DNA Motifs |
Many small molecules have structural characteristics such as aromatic rings which allow them to bind within the major and minor grooves of double stranded DNA. These molecules serve many different purposes, including the ability to regulate transcription and stop cells from dividing. One such molecule is nogalamycin, a dumbbell-shaped anthracycline antibiotic drug, which threads itself between the base pairs of DNA strands (Bhuyan, 1970). Its low dissociation rate makes it a unique DNA binding drug worth studying as a class of anticancer therapeutics, as 2009 St. Lawrence Graduate Matthew Millard noted. Previous investigations relied on large quantities of DNA; we hope to develop a method to allow investigation of specific DNA types. This will be attempted using gel electrophoresis to compare binding affinities of nogalamycin to circular plasmid DNA. The assay determines the amount of relaxation of the plasmid as a function of drug concentration. The more relaxed the plasmid is, the shorter distance it will travel in the agarose gel. This technique has been successful with molecules that intercalate, so we are optimistic that a threaded molecule will produce similar results. However, while threading distorts the helix in a similar way as intercalation, thereby inducing supercoiling, it is uncertain whether the threaded complex will dissociate as the gel runs. If we can adapt the methodology for threading molecules, then the focus of our research will be to expose nogalamycin to different DNA motifs to compare binding strengths, which is important for development of drug molecules that bind preferentially with specific DNA motifs. |
Senior Year Experience - Non Honors | Poster | Biochemistry | view | 2012 |
| Melissa Fogarty | The Effects of Natural Background Radiation on Lung, Colon, and Bladder Cancer Incidence and Mortality Rates in Twelve New York State Counties |
Natural background radiation makes up 82% of human radiation exposure and is inescapable as it is constantly emitted by cosmic and terrestrial sources in our environment. Two competing theories have attempted to explain the relationship between radiation levels and cancer risk. Proponents of the linear non-threshold model propose that cancer risk increases in a linear function to radiation exposure. Thus, all forms and exposure levels are harmful to human health and can lead to cancer, creating the foundation of our current knowledge regarding radiation. Others, however, believe that only high levels of radiation can lead to negative health outcomes and that low levels of radiation can actually lead to multiple health benefits, the most significant being protection against cancer (hormesis theory). The aim of this study was to determine if humans could adapt to natural background radiation, depending upon exposure levels. This study utilized a discriminant function analysis procedure to compare lung, colon, and bladder cancer incidence and mortality rates, from 2004 to 2008, to radon averages in twelve New York state counties. The results of the analysis found that there is no correlation between lung, colon, and bladder cancer mortality and incidence rates and radon averages in the twelve New York state counties tested. Suffolk County had the second lowest radiation average, yet cancer incidence and mortality rates were highest for both sexes in all three types of cancer tested. Cortland County had the highest radon average, yet cancer incidence and mortality rates were the lowest for all three types of cancer in males. These findings strongly support the hormesis theory, thus alluding to a potential human adaptation to natural background radiation. |
Course Project | Poster | Anthropology | view | 2012 |
| Kelly Fuchs | Development of an assay to challenge and quantify immunocompetence of Xenopus laevis exposed to an immunosuppressant |
Steroid hormones, such as cortisol, suppress the immune system by influencing various cell-mediated responses. Through down regulating helper-inducer T cells and increasing suppressor T cells, glucocorticoids are capable of reducing inflammation (Ogawa 2000). Pharmaceutical companies utilize this mechanism by treating patients with Dexamethasone, an analog of cortisol. Although useful, extended exposure to an immunosuppressant is unfavorable for an organism. More specifically, an organism living in an environment contaminated with an endocrine disruptor may be more susceptible to disease or infection due to this immunosuppression. Bisphenol-A (BPA) and atrazine are chemicals commonly found in our environment within plastics and herbicides and are recognized by the body as steroid hormones (Hayes 2002). |
Senior Year Experience - Non Honors | Poster | Biology | view | 2012 |
| Gary Gilmond | Administration of Ceria Oxide Nanoparticles as a Potential Treatment for Rheumatoid Arthritis |
Rheumatoid arthritis (RA) is a devastating and incapacitating autoimmune disease that originates from T cells incorrectly targeting collagen fibers within the joints, resulting in chronic inflammation, pain, and ultimately hindered mobility. Macrophage immune cells play a significant role in the progression of RA through the release of inflammatory cytokines such as IL-1β and TNF-α as well as Radical Oxygen Species (ROS). In particular ROS acts as both a significant generator of tissue damage as well as a perpetuator of inflammation and immune activation. Therefore characterizing the effectiveness of new agents aimed at diminishing ROS production and macrophage infiltration is an important endeavor in order to identify new therapies that may halt RA progression. Recent research at St. Lawrence University has shown that lanthanide metal Ceria Oxide nanoparticles (NPs) are extremely effective antioxidants, capable of reducing ROS levels in macrophage cultures. Since macrophage cells in RA utilize ROS to damage cartilage tissue as well as signal for further immune recruitment, treatments aimed at eliminating ROS could play a significant role in reducing RA progression. Thus the purpose of our experiment was to test the ability of these NPs to reduce RA symptoms in a mouse model in vivo, and macrophage inflammation signals in vitro. We hypothesize that the NPs will significantly reduce the progression of RA symptoms by neutralizing the ROS, and thus diminish the presence of pro-inflammatory proteins. To test this we induced arthritis in 20 DBA/J1 mice, treated them with either NP or control solution, and measure paw thickness and joint mobility for a 90 day period. Likewise we measured inflammatory protein production by RAW 264.7 macrophage cells using an ELISA technique and further determined the effectiveness of the NP to reduce general and specific ROS molecules within these cells via luminescence microscopy. |
Senior Year Experience - Non Honors | Poster | Biology | view | 2012 |
| Amanda Godin | Up or Down Diagonal, Which Do You Choose? |
This paper considers networks created from different combinations of two tiles. Both are squares, one with a diagonal from the top left to the bottom right and the other with a diagonal from the bottom left to the top right. Each network will have some combination of up and down tiles lined up horizontally next to one another. In the resulting networks one can only move down the vertical lines and from the left to the right. Start at point A on the top left and end at point B on the bottom right. This paper discusses which combinations of tiles give the greatest number of paths, the least number of paths, and how different combinations of tiles can give the same number of paths. More specifically, if we have a string of n up-tiles where should we place 1, 2, or, 3 down-tiles to give the most number of paths. With 1 down-tile and a string of up-tiles, it has been concluded that the down tile should be placed on either end of the string of up tiles to maximize the number of paths possible through that specific network. Interestingly, there are two different networks that can give you the same number of paths. The networks that will always give you the same numbers of paths are in reverse order of one another. For example, 2 up-tiles then a down tile would have the same number of paths as one down tile followed by 2 up tiles. |
Course Project | Poster | Mathematics | view | 2012 |
| Patricia Goodhines | Use of sedatives and stimulants for management of sleep and wake states in college students |
CONTROL ID: 1313973 CONTACT (NAME ONLY): Pamela Thacher PRESENTER: Pamela Thacher Abstract Details ABSTRACT_STATUS: draft PRESENTATION TYPE: Poster Presentation CURRENT PRIMARY CATEGORY: A. Basic Sleep Science KEYWORDS: substance use, academic achievement, college students. AWARDS: Abstract TITLE: Use of sedatives and stimulants for management of sleep and wake states in college students AUTHORS (FIRST NAME, LAST NAME): Pamela V. Thacher1, Patricia Goodhines1 INSTITUTIONS (ALL): 1. Psychology, St. Lawrence University, Canton, NY, United States. Introduction : Most college students use a variety of substances as they manage their social and academic lives, including caffeine, nicotine, and alcohol, and students also use licit and illicit drugs such as marijuana and stimulants including methylphenidate. One goal of some students may be to manipulate their wakefulness and sleepiness through pharmacological means, which may adversely affect health, cognition, and academic achievement. Our study sought to discover more about the types and patterns of substances used primarily to manipulate states of wake/sleep. Methods : Participants were recruited through psychology courses for credit. Participants who indicated either FEW (0 or 1) or MANY (5 or more) stimulants or sedatives ingested to manipulate wake/sleep were invited into the study. They completed cognitive tasks (Digit Symbol Substitution and a Letter Cancellation task) and measures of sleep patterns, health, medication and substance use. All participants reported estimated cumulative GPA. Results : Of 69 screened students, 28 (19 women) completed measures; mean age was 20. Groups did not differ by gender. Groups did not differ on performance on cognitive tasks nor on GPA. Preliminary examination of sleep did not reveal group differences. Stimulant use was correlated with marijuana use (r=.36) and pulling all-nighters (r=.36); sedative use was correlated with caffeine use (r=.48). Groups did not differ with respect to alcohol, nicotine, or marijuana use. "Frequent" users of substances to manipulate sleep/wake state primarily differed in number of reported prescription medications (t=2.5, p<.03). Conclusion: In this preliminary pilot study, students who reported that they often used substances to affect wake/sleep state of consciousness were also more likely to be using significantly more prescription medications, but were not more likely to be using nicotine or alcohol. |
Senior Year Experience - Honors | Poster | Psychology | view | 2012 |
| Bonnie Govoni | Upper Jurassic Oxfordian Muddy Carbonates, Southern Adriatic Platform, Croatia |
This study focuses on a 343-m-thick section of Upper Jurassic shallow-marine limestone and some dolostone from Jasenice near Dubrovnik, Croatia. The fieldwork was conducted over a two-week period, partially funded by the Center for International and Intercultural Studies. The lower units begin in the Callovian-stage of the Upper Jurassic (around 161.2 ± 4.0 mya), and are characterized by small packages of repeating subtidal to intertidal type rocks consisting of dolomite layers (some weakly laminated), peloidal skeletal wacke-packstone, packstone and grainstone, and capped by lime mudstone or burrowed laminite. These caps have fenestrae and rare scalloped contacts, indicative of a drop in sea level, subaerially exposing the rocks. Moving up the section, the rocks become muddier and microbial lumps and burrows are more common. The transition into the Oxfordian-stage is distinguished by thick packages of brown-colored lime mudstone, which alternates with coarse, thick to massive dolostone. The lime mudstones contain microbial lumps, shell fragments, and abundant foraminifera. Thin beds of lime wacke-mudstone and intermittent skeletal wackestone break up these larger beds. Both the lime mudstone and wacke-mudstone become barren for a span of almost 30 meters up-section. The presence of these thick mudstones suggests that carbonate formation was not happening as rapidly as space was becoming available (accommodation). This is likely due to sea level rise coupled with gradual sinking of the platform. The accommodation rate began to decrease or production rate began to increase in the later Oxfordian units indicated by an increase in microbial lumps, benthic foraminifera, and fragments of calcareous algae. The section extends into the Kimmeridgian-stage, which is regionally identified by the appearance and abundance of calcareous alga Clypiena jurassica. |
Independent Study | Poster | Geology | view | 2012 |
| Bonnie Govoni | FRENCH BAY AND PIGEON CREEK LAGOONS, SAN SALVADOR: A COMPARISON OF GREEN ALGAE FACIES |
Green algae are the major contributor to shallow-marine carbonate sediments. This study focuses on the environmental differences influencing algal associations and sediment type of the two lagoons on San Salvador Island, Bahamas. At both locations, four transects were made to describe the algal associations and map the bathymetry. Each transect had three points (100ft, 200ft, 300ft) that were closely examined for green algae using a 1 square meter grid. The transects were spaced 300ft apart; the distance between the points was measured along the coastline using a measuring tape, and a meter-stick was used to measure the depth along them. For French Bay, the transects extended seawards due south into the lagoon. In Pigeon Creek the transects extended westward from the mangrove-covered eastern lagoon shore. Samples of different algae were taken and stored in a wet lab until identification at genus and species level was made. The bathymetrical data was used to create depth profiles of the transects, and then combined to map each respective lagoon using Surfer software. The environment differed greatly between the two locations. French Bay is an open, wave-dominated lagoon and contains many small patch reefs. The algae are mostly contained in small Thalassia meadows or located on the reefs and limited to Halimeda, Udotea, and Penicillus. Pigeon Creek is a protected tidal lagoon, flanked by the mangroves. The algae are dispersed throughout the lagoon in Thalassia meadows, around shrimp mounds, and along the tidal channel. Pigeon Creek exhibits a more diverse population, including Halimeda, Udotea, Rhipocephalus, and Caulerpa. |
Poster | Geology | view | 2012 | |
| Emily Greer | Measuring the escape response times of frog embryos high in dietary methylmercury using high-speed videography |
In response to a sudden external stimulus (sound, light, vibration), late-stage frog embryos and tadpoloes exhibit an escape reflex called a C-start. A C-start has two components: an intial nonpropulsive head rotation, followed by a propulsive component in which the tadpole moves away from its starting point with vigor. We have developed an assay using high-speed videography to quantify the duration of the lag time (in milliseconds) between the delivery of a stimulus (sudden vibration caused by the impact of a weight on the dish containing the embryos) and the initiation of the C-start. Methylmercury (MeHg) is a toxic form of Hg known to bioaccumulate in wildlife and is thought to negatively impact the nervous system. Here we describe the maternal effects of a diet high in MeHg on the duration of the stimulus-response lag period of frog embryos (4-6 days post-fertilization). No tadpole response was observed four days post fertilization. There was a difference between tadpoles fed a high and low MeHg diet five days post fertilization. A significant difference was observed between tadpoles fed a high and low MeHg diet six days post fertilization (p-value = 0.0497). We hypothesize that elevated mercury levels may be the cause of longer response times (in milliseconds) that it takes a tadpole to exhibit an escape reflex. |
Senior Year Experience - Non Honors | Poster | Biology | view | 2012 |
| Cassidy Griffin | Obtainability of Strong Orientations: Creating an Efficient Network of One-Way Streets |
A strong orientation of a graph is a way to orient the edges so that the resulting directed graph is strongly connected, meaning it is possible to get from any vertex to any other vertex while following the arrows. In his book Graph Theory and Its Applications to Problems of Society, Fred Roberts describes a depth-first search algorithm (which we call the Roberts Algorithm) for putting a strong orientation on a graph. We call a strong orientation obtainable if it is possible to arrive at that orientation using some application of the Roberts Algorithm. We present results about obtainable and unobtainable orientations, including classes of graphs which have unobtainable orientations and classes of graphs for which all orientations are obtainable. In addition, we discuss relative efficiency of orientations which are obtainable or unobtainable, using four different ways to measure efficiency or optimality. |
Senior Year Experience - Honors | Oral Presentation | Mathematics | view | 2012 |
| Maria Hall | Acoustic Survey of Bat Species in Deciduous, Evergreen, and Agricultural Habitats in Northern New York |
The ecological role of bats in Northern New York is critical to the overall health of various ecosystems. Bats are the primary consumers of nocturnal insects, many of which are economically important pests (Agosta 2002). Despite this role, little is known about the basic life history of different bat species. There is very little information about habitat preferences and spatial and temporal partitioning of bat species. Accurate population data is also lacking, even for widespread or locally common species. Bats populations across eastern North America are being devastated by white nose syndrome, a fungal disease caused by Geomyces destructans, so data on bat populations, range and diversity is critical. The focus of my research is to gain a better understanding of bat species richness and diversity. I also worked to gain a better understanding of where bats occur spatially and temporally in Northern New York, using GIS mapping technology. Using acoustic detection survey data collected in the summer of 2010, I compared the bat diversity and habitat use in three habitat types: agricultural, deciduous forest, and evergreen forest. My preliminary results demonstrate that bat abundance and diversity is highest within deciduous forests. Bat abundance in evergreen forests and agricultural land is very similar. The most common species detected throughout all habitat types were big brown bats (Eptesicus fuscus), while northern long-eared myotis (Myotis septentrionalis), eastern pipistrelle (Parastrellus subflavus), and the federally endangered Indiana bat (Myotis sodalis) were detected infrequently in agricultural habitats. |
Senior Year Experience - Non Honors | Poster | Conservation Biology | view | 2012 |
| Ashley Hartz | Risky Decisions: Are Hormones to Blame? |
Most decisions carry some degree of risk, or the potential of a negative outcome, and previous research suggests that levels of sex hormones can affect risky decision-making. This study investigated how perceptions of risk might change as a function of menstrual cycle phase (menses, late-follicular, and mid-luteal) in healthy undergraduate heterosexual women that were either naturally-cycling (NC) or using oral contraceptives (OC) (n=40/group). Participants rated the riskiness of behaviors and their likelihood of engaging in those behaviors, and completed the Balloon Analog Risk Task (BART), which assesses propensity towards risk-taking. In addition, participants were presented with risky situations for which they were asked to select a preferred male face (either masculinized or feminized) to hypothetically share that situation. Saliva samples were collected and assayed for estrogen and progesterone. Preliminary results indicate that NC women showed a higher propensity towards risky behavior and preference for masculine faces during the luteal phase, whereas the OC women showed these tendencies during the menses phase. The association between hormone levels across phases of menstrual cycle and risk preferences/risky behaviors will be discussed. |
Senior Year Experience - Honors | Poster | Psychology | view | 2012 |
| Andrew Hayes | Computational Design of a Stabilized Glucose Galactose Binding Protein |
The objective for my research is to design a stabilized Glucose-Galactose Binding Protein (GGBP) protein using computational methods. This involves manipulating the charged residues on the surface of the protein to decrease the energy of the folded protein relative to its unfolded form. We used modeling software and the Tanford-Kirkwood model to evaluate interactions on the native protein and identify possible mutations. The objective of developing these mutants is to produce them with mutagenesis and test them against denaturation curves of the wild type protein. So far we have determined preliminary denaturation curves for wild type GGBR bound and unbound to glucose in a urea environment. |
Senior Year Experience - Non Honors | Poster | Chemistry | view | 2012 |
| Ryan Horn | Pharmacological suppression of matrixmetalloprotease (MMP) activity inhibits intestinal remodeling during Xenopus laevis metamorphosis |
Metamorphosis of the African Clawed Frog, Xenopus laevis, involves a number of dramatic tissue remodeling processes that are mediated by thyroid hormone in the animal. During metamorphosis, the tadpole’s intestine shortens by seventy-five percent, front and hind limbs form, and the gills and tail are completely resorbed. Accompanying the onset of metamorphosis is the increased expression of matrixmetalloproteases (MMPs). MMPs are enzymes that cleave peptide bonds of extracellular matrix proteins. During X. laevis metamorphosis, thyroid hormone upregulates mRNA expression of several MMPs in resorbing and proliferating tissues where matrix proteins are degraded. Furthermore, virtually all tissue remodeling is inhibited when metamorphosing tadpoles are treated with pharmacological MMP-inhibitors (doxycycline and Ilomastat). Thus we have proposed that MMPs play a central, active role in many of the tissue-remodeling processes of metamorphosis. The main goal of our summer research was to better describe the role of MMP enzymatic activity in X. laevis metamorphosis, specifically in the gut. More recently, we have focused on the actions of MMPs in tail resorption during metamorphosis. While our work on the tails is still in the early stages, we have produced significant experimental data supporting the hypothesis that upregulation of TH-responsive MMP activity during metamorphosis mediates diverse changes that accompany intestinal remodeling. |
Summer Research | Poster | Biology | view | 2012 |
| Allysa Houle | Assessment of Mercury Levels in Tree Swallows Living near Wetlands and other Surrounding Bodies of Water in the St. Lawrence River Valley |
The research conducted in this study examined the levels of mercury in tree swallows in the St. Lawrence River Valley: those nesting in or near wetlands compared to those near or far from other water bodies. Wetlands provide the perfect conditions for the change of inorganic mercury, found in rain and anthropogenic emissions, to its organic form, methyl mercury. By looking at the mercury levels present in the feathers of young tree swallows, we could conclude whether there are elevated mercury levels in local wetlands and whether these concentrations are higher than those in tree swallows living in closer proximity to other water bodies. |
Summer Research | Poster | Biology | view | 2012 |
| Leah Houston | Subliminally Motivated: Can Subliminal Primes Improve Learning? |
Previous research has shown that subliminal priming can affect behavior when primes are related to the individual’s pre-existing deprivational state (e.g., thirst, fatigue). Subliminal primes are visually-presented stimuli that are processed outside of one’s conscious awareness but have the potential to affect behavior. However, research has not considered the possibility that learning and memory can also be influenced by subliminal primes. In the current study, we examined the effects of achievement primes (e.g., win, excel, achieve, dominate) on ability to memorize words. Participants were placed in either an “intellectually deprived” or “intellectually satisfied” state by completing a set of very hard or very easy verbal reasoning problems. They then studied a list of 42 words preceded by either achievement primes, neutral primes (e.g., eat, paint, import, fashion) or no primes, with primes presented for 45ms and backward- and forward-masked. Participants also completed a letter cancellation task to measure vigilance, as well as measures of diligence, sleep and achievement motivation. The results will examine whether subliminal primes affect memory recall and consider whether individual differences in vigilance and alertness, conscientiousness, and achievement motivation moderate these effects. |
Senior Year Experience - Honors | Poster | Psychology | view | 2012 |
| Jenna Hulton | Investigating the Effects and Influences of Women’s Choices in Childbirth |
Over the past century, pregnancy and the process of giving birth has been extremely medicalized. One third of all births in the United States are delivered by cesarean section and this rate has been increasing dramatically over the past 12 years. Epidural anesthesia is also commonplace in the United States, to help woman to cope with the pain of labor, as well as other technologies such as induction medications and fetal heart-rate monitors. Although most Americans solely pursue an obstetrician for pregnancy and delivery care, trained midwives (CNM) and doulas are other healthcare personnel that take a different, more natural approach to childbirth. The current study explored the different sectors of childbirth practices, gaining a greater understanding of what influences women to make the choices they do in respect to birthing practices. In addition, 244 college students from upstate New York were surveyed to determine knowledge and beliefs of birthing practices among a college-age population. Finally, the study reviewed previous studies that have measured the influences and effects of birthing choices on the mother and infant. Overall, the current study concluded that there still exists a need for more education of the birthing choices available to women, as well as providing women with better information about the effects of interventions such as cesarean sections and epidurals. |
Independent Study | Poster | Sociology | view | 2012 |
| Jon Ignatowski | In Search of Place: Using GIS to Determine Site Selection for a Future Home |
In this particular project, I was determined to apply GIS to one of the most basic needs of the human species: shelter. We need a roof over our heads to comfortably live our lives, and in our culture, we have established complex webs of laws and market that restrict where we start to build, and how we build. To sort through the quagmire modern society has bequeathed to me, I applied GIS to spatially determine, using appropriate geoprocessing tools and selections, where I could possibly live someday. I wanted to be very selective of potential locations, for I have staunch expectations for the course of my future: I want to live as “sustainability” as possible, to live with the land as my nourishment and resource base, to live without extensive fossil fuel use, and to live in a recreationally and academically rich environment. There are many conditions that I have in mind when I think about living somewhere, and GIS allowed me to geospatially interrelate all of these conditions in three geographic case studies in the New York region. As a result, I have determined that there are three communities in the State of New York; Alleghany County, Canton, and Utica; that may be the most suitable in regards to the future lifestyle I intend to live. Thus, I have used GIS in a way that can be effectively used for anyone interested in finding a community that matches their interests. |
Course Project | Poster | Geology | view | 2012 |
| Jessie Ingalls | Does Doxcycline Decrease the Expression of MMP11 During Frog Metamorphosis? |
Matrix metalloproteinases (MMPs) are enzymes that play important roles in modifying components of the extracellular matrix during various biological processes, including the metamorphosis of frogs. One major change during metamorphosis is the remodeling of the tadpole intestine. Remodeling of the intestine decreases its overall length and produces a thicker and more complex intestinal lining. Stromelysin-3 (MMP11) is an MMP that is highly expressed in the intestine during metamorphosis and is essential to the remodeling process. MMP11 gene expression increases in response to increased levels of thyroid hormone, the inducer of frog metamorphosis. Previous studies have shown that the antibiotic, doxycycline, binds to almost all matrix metalloproteinases, inhibiting enzyme activity. Research in Dr. Schreiber’s lab at St. Lawrence University has demonstrated that frog tadpoles exposed to very low levels of doxycycline do not undergo metamorphosis. Although doxycycline directly inhibits the activity of MMPs, it may also decrease enzyme activity by effecting the expression of MMP genes. The objective of our study was to determine if doxycycline decreases MMP11 activity by decreasing the number of MMP11 mRNAs available to direct the production of enzyme molecules. We used quantitative real-time reverse transcription-polymerase chain reaction (qRT-PCR) to measure the expression levels of MMP11 and a normalizer gene, riboprotein L8 (RPL8), in five groups: 1) pretreatment tadpoles, 2) no treatment tadpoles, 3) thyroid hormone-treated tadpoles, 4) doxycycline-treated tadpoles, and 5) doxycycline-treated tadpoles treated with thyroid hormone. The results of our study indicate that doxycycline does not affect MMP11 gene expression during metamorphosis. |
Senior Year Experience - Non Honors | Poster | Biology | view | 2012 |
| Sara Jones | Thursdays with Giuseppe: An Autoethnograph Exploration |
Who are you and from where does this you emerge? I was drawn toward questions of personhood and autonomy, and the delineations for claiming cultural “authenticity.” I sought (through active engagement of cooking with my Grandfather and journaling my reflections) the traditions of my Italian ethnic group, deeply founded upon food and cuisine to understand how trans-generational, trans-geographical, and trans-cultural food memories are internalized in a construction of identity. The elemental power of food to stimulate our sensory modalities (by engaging our gestation, olfaction and tactile responses) is intrinsically connected with the construction of meaning and memory, and ultimately, with cultural identity. Human beings engage with cuisine via a multimodal and multi-sensory evaluation. It is this multifaceted process that guided the methodology behind this work. |
Senior Year Experience - Honors | Poster | Performance and Communication Arts | view | 2012 |
| Emma Kearney | The Future of Driftwood as a Subsistence Resource in Shaktoolik and Savoonga: A Statistical Analysis of Driftwood Distribution |
Many native Alaskan villages collect readily-found driftwood from nearby beaches as a subsistence source of heat and fuel. However, driftwood load and distribution may be altered by climate change impacts, including increasing storm intensity and ocean current pattern shifts. Changes in driftwood load would affect villages’ subsistence resource, forcing these communities to turn to other heat and fuel sources. I have collected core samples from driftwood along beaches in two native Alaskan villages, Shaktoolik and Savoonga, with the ultimate goal of determining the source of the driftwood deposits. Smoothing splines and time series techniques will be used analyze these core samples. We investigate the challenges of working with driftwood in dendrochronology and discuss how our findings can be used to identify the source of the driftwood deposits. |
Senior Year Experience - Honors | Oral Presentation | Mathematics | view | 2012 |
| Shazra Khan | Neuroprotective effects of a novel antioxidant in a C. elegans model of Parkinson's disease |
Parkinson’s disease (PD) is a neurodegenerative movement disorder caused by the death of dopaminergic (DA) neurons in the substantia nigra of the brain. Although the cause of death of these neurons is unknown, studies suggest that it involves oxidative stress (free radicals) and mitochondrial dysfunction. We used a Caenorhabditis elegans (nematode roundworm) model of PD to study the potential for a novel antioxidant, cerium oxide nanoparticles (CeO2 NPs), to protect DA neurons from death. The aim of the present study was to test the hypothesis that nematodes treated with CeO2 NPs would display less DA neuronal damage than untreated nematodes. The BY250 worm strain expresses green fluorescent protein (GFP) in DA neurons, allowing the amount of fluorescence to be taken as a measure of DA neuron viability. The neurotoxin 6-hydroxydopamine (6-OHDA, a hydroxylated analogue of dopamine) was used to induce oxidative stress. Nematodes were pre-exposed for 48 hours to three different types of CeO2 NPs to allow for nanoparticle uptake. Once worms had reached the fourth larval stage of development, they were treated with 10 mM 6-OHDA for 30 minutes, and allowed to recover for 48 hours. Worms were then anesthetized and imaged for GFP fluorescence to determine DA neuron viability post 6-OHDA exposure. Worms exposed to a 58 µM dose of native CeO2 NPs displayed the highest level of protection against damage when compared to control worms. These results suggest that CeO2 NPs should be further explored as a novel therapeutic option for the treatment of PD. |
Senior Year Experience - Non Honors | Poster | Biology | view | 2012 |
| Krysia Kornecki | WHAT CAN WE LEARN FROM 55 MILLION YEAR OLD SNAILS? A TAXONOMIC STUDY OF THE PALEOCENE CAENOGASTROPODA OF THE CANNONBALL FM. AND THEIR IMPLICATION FOR PALEOGEOGRAPHY AND SYSTEMATICS |
Abandonment of the systematic organization of the Gastropoda some 20 years ago may have “de-railed” an expansion of paleontological research interest in the group in the mid 1970’s. Databases being used by paleobiologists are dependent on stability of the systematics for accurate comparability. Perhaps, a new system is emerging. Our purpose has been to 1) identify the Caenogastopoda in unstudied material of the Cannonball Fm.; 2) update the systematics of the known snails from this unit; 3) make comparisons with two important regional faunas. As such, we have used the new systematics of Bouchet and Rocroi (2005). The snail fauna of the Paleocene Cannonball Fm. of North Dakota was compared against the Cretaceous Fox Hills Fm. of the Western Interior and the Paleocene Agatdal Fm. of West Greenland. Faunas were compared both to each other and across taxonomic systems. |
Senior Year Experience - Honors | Oral Presentation | Geology | view | 2012 |
| Thomas Kraft | Social Media Mining and Analysis |
This project entailed developing software to mine data from Twitter to |
Senior Year Experience - Non Honors | Poster | Computer Science | view | 2012 |
| Kiersten LaPorte | Loading of Elements and Anions to the St. Lawrence River from Tributaries in St. Lawrence County, New York |
A year-long sampling event (June 2011 to June 2012) is being conducted on four rivers belonging to the St. Lawrence River Basin—Oswegatchie, Grasse, Raquette, and St. Regis. Physical and chemical characteristics of water quality are being collected to: (1) establish a base line for water quality and the anthropogenic implications on the drinking water for local communities, as well as the habitat for aquatic life, and (2) determine the contribution of elements and anions to the St. Lawrence River from tributaries in St. Lawrence County, New York. Ion Chromatography is carried out for the quantification of seven anions—F-, Cl-, NO2-, Br-, SO42-, NO3-, and PO43-. ACME Analytical Laboratories analyze samples by inductive coupled plasma mass spectrometry (ICP-MS), which facilitates the quantification of 70 elements in each water sample. Acid neutralizing capacity and carbonate quantities are also being determined. The combinations of physical and chemical characteristics of water quality, along with U.S. Geology Survey data, are used to reveal trends and correlations relating to each of the four rivers. Geological and anthropogenic factors are used to explain the analyzed data. |
Senior Year Experience - Non Honors | Poster | Chemistry | view | 2012 |
| Jennifer Lipps | Neuroprotective Effects of Ceria Nanoparticles in an Animal Model of ALS |
Oxidative stress occurs when reactive oxygen species (ROS) accumulate and damage cellular moieties through processes such as lipid peroxidation, DNA destruction and the S-nitrosylation of proteins. Research has shown that oxidative stress is a contributing factor to the onset and progression of many neurodegenerative diseases, including Amyotrophic Lateral Sclerosis (ALS). The benefits of antioxidant therapies in the progression in ALS have been modest for two principle reasons. First, it is difficult to get sufficient quantities of the antioxidants into the brain and second, the catalytic activity of these compounds in the neutralization of ROS is quite low. Recently, we have developed crystallite, nanoparticles composed of cerium oxide that are highly potent antioxidants that can either operate as electron donors or electron acceptors in redox coupled reactions. These 2.5 nm particles, which are composed of 80 atoms, are regenerative antioxidants that continue to neutralize ROS as long as they are resident in tissue. In this study we examined the neuroprotective effects of ceria nanoparticles delivered weekly to a murine model of ALS, the G93A mouse model. This model is a toxic, gain-of-function mutant that results in increased generation of superoxide and hydroxyl radicals that lead to selective destruction of spinal motor neuron pools leading to progressive weakness in skeletal muscle. Here we show that survival interval (the number of days between onset and a pre-determined severity of illness) in treated mice was significantly different from control in male mice across all dosing levels but effective in females only at the highest dosing. These findings suggest ceria nanoparticles have differential effects in males and females but may be useful as a therapy in ALS. |
Senior Year Experience - Non Honors | Poster | Neuroscience | view | 2012 |
| Maryn Manning | Is Your Country Better Than the Rest? |
How do you perceive your country compared to the hundreds of other countries in the world today? In order to quantify this curiosity, Newsweek ranked the top 100 countries in the world based on various statistics from 2008 including health index, population size, quality of life, and more. In an attempt to further understand and dissect this social and economic set of data, Bayesian statistics is used to model the overall ranking of each country. Furthermore, as the issue of multicollinearity has appeared throughout the modeling, we investigate how Bayesian Statistics can be used to address this problem. |
Senior Year Experience - Honors | Poster | Mathematics | view | 2012 |
| Caitlin McArdle | Sensation Seeking, Peer Influence, and the Use of Safety Equipment |
Safety equipment is one of the most common methods parents and caregivers use to protect children, and it is important to understand how it affects child behavior. Several studies have indicated that children have target levels of risk and adjust their behavior to meet this risk level. This would mean that safety equipment may actually lead to the child taking larger risks, in order to maintain a “comfortable” risk level. Sixty-one students from the fourth, sixth, and eighth grades completed questionnaires that measured: 1) sensation seeking, and 2) “risky” recreation. For the latter questionnaire, students viewed a person participating in an activity with or without safety equipment, imagined themselves to be that person, and completed rating scales that measured peer influence, risk perception, and participation rates. We hypothesized that children high in sensation seeking would 1) show less risk compensation and 2) be more likely to respond to pressures from risk-taking peers. Results indicated that high sensation seekers were only slightly less inclined to show risk compensation. We also found that, converse to our hypothesis, high sensation seekers were less likely to respond to pressures from risk-taking peers. It seems that high sensation seekers would continue to participate in a risky activity regardless of their peers’ opinions, since high sensation seekers naturally have more desire for risks. In order to more fully understand the relationship between high SS and risk compensation, future studies will need to gain a more in depth depiction of children’s risk behaviors within a given activity. |
Senior Year Experience - Honors | Poster | Psychology | view | 2012 |
| Douglas McWilliams | The role of 14-3-3 proteins in mediating rapamycin-altered gene expression |
Rapamycin is a small molecule that alters yeast gene expression in a way that mimics cellular starvation. However, not much is known about how these transcriptional changes are mediated. 14-3-3 proteins are a highly conserved group of proteins that participate in a variety of biological functions and are known for their ability to interact with DNA to regulate gene expression. Preliminary data indicates that these proteins may play a role in mediating rapamycin-altered gene expression. One possible mechanism for this is that 14-3-3 proteins regulate transcription though the phosphorylation of serine-28 on H3. In order to test this hypothesis we have a mutant yeast strain with alanine in place of serine-28 (S28A) to prevent phosphorylation. We will use microarray analysis and RT-qPCR to compare gene expression in the wild-type yeast strain lacking 14-3-3 proteins with the S28A strain upon rapamycin treatment to see if 14-3-3 proteins play a role in rapamycin-influenced gene expression. These changes will be confirmed through the use of chromatin immunoprecipitation (ChIP). |
Senior Year Experience - Honors | Poster | Biochemistry | view | 2012 |
| Nicholas Mello | Do Antihistamines Block Allergy Induced Anxiety? |
A correlation has been shown between having allergies and developing anxiety in humans. This correlation has been proven in mice that were induced with an allergy to OVA (egg white albumin). The biological mechanism linking allergies to increased anxiety is not fully understood, though T-Cells have been found in the brains of mice with allergies. One potential mechanism behind this allergy induced anxiety is histamines. Histamines are pro-inflammatory molecules released by mast cells during an allergic response. They also increase the permeability of the blood vessels, which potentially could be how the T-cells get into the brain. Typical antihistamines block the H1 receptor on the blood vessels to prevent this increased permeability that leads to the classical allergy symptoms. If histamines are involved in the pathway of allergy-induced anxiety, then the anxiety levels would theoretically decrease with antihistamine treatment. To test the role of histamines in the pathway of allergy induced anxiety, mice were assigned into four groups: mice that were not induced with allergies or treated with antihistamines (untreated) , allergy induced only mice, antihistamine treated allergy induced mice, and antihistamine treated non-allergic mice. Approximately 3 weeks after allergy induction, mice were challenged with intranasal doses of OVA. Anxiety was then measured using an Open Field test and an Elevated Plus Maze test. T-cell infiltration into the brain was also measured using immunohistochemistry. Initial findings show that antihistamines did not decrease anxiety in allergic mice and in fact, may have increased anxiety in these mice. Due to a small sample size this study must be replicated. However the results raise questions about possible unintentional side effects of antihistamines used in allergy paitaints. |
Senior Year Experience - Non Honors | Poster | Biochemistry | view | 2012 |
| Taylor Moon | Gravinol treatment of melanoma cell decreases metastasis |
Grape seed proanthocyanidins (GSPs) interfere with the pathway for the epithelial-mesenchymal transition in cancer cells, likely through the COX-2 pathway. This transition promotes the metastatic or migratory capabilities of tumor cells. Gravinol is a form of grape seed extract used in human nutraceuticals, and therefore provides a relevant and well understood treatment for our B16 mouse melanoma cell line. Gravinol treatment as low as 5 mg/mL impaired cellular growth of B16 cells in an in vitro wounding assay. A Boyden’s chamber assay was used to confirm that un-treated cells migrate better through a model extracellular matrix than cells exposed to Gravinol. The mechanism for these observations is unclear at this point. However, the antioxidant properties of Gravinol were illustrated via the measurement of reactive oxygen species (ROS) produced by B16 melanoma cells cultured with or without Gravinol. Given these in vitro observations and the fact that grape seed extract has shown no evidence of toxicity in vivo, Gravinol could be a viable treatment supplement for many types of cancer. |
Senior Year Experience - Non Honors | Poster | Biology | view | 2012 |
| Tim Moore | Recreating Booming Sand: Collective Vibrations of Marbles in a Granular Flow |
“Recreating Booming Sand: Collective Vibrations of Marbles in a Granular Flow” Tim Moore Specific regions of the world have sand that when avalanched down a dune face will emit a low booming sound. It has been hypothesized that for sand to “boom” it must be very dry and well-sorted, with round grains of similar size and composition. A collection of marbles cascading down an incline has these characteristics. The purpose of the experiment was to see if marbles can exhibit the booming characteristic and if so whether the emitted frequency matched the frequency predicted by Bagnold. The dune was replaced in the experiment with a trough, having one Plexiglas side, which could be raised to varying angles and was lined with marbles glued on the bottom. Approximately 22,000 marbles were released down the trough. We recorded the audio signal of the flow at various angles and a high-speed video capture of the flow as seen from the side. The audio signal was analyzed with the discrete Fourier transform to identify resonant frequencies. The essential parameter in the Bagnold equation is the marble density within the flow, which was determined using the video capture. Preliminary results show a weak resonance at the predicted frequency. |
Senior Year Experience - Honors | Poster | Physics | view | 2012 |
| Jeremy Moulton | The Effectiveness of Home Education |
In 1999 the reported number of homeschooled students was 850,000, and in 2009 that number jumped to an estimated 3,000,000. With this rise in home education, there is a lot of research to be done on how effective it is. By analyzing a survey sent out to local homeschool alumni, it is possible to determine relationships between different factors of home education, which will then give a better understanding of how well home education equips people not only academically but personally as well. In order to effectively analyze the survey, proportional odds logistic regression needs to be applied to find a model that accurately explains the data. |
Senior Year Experience - Non Honors | Poster | Statistics | view | 2012 |
| Patrick Mullen | The Biological Effects of Nanoceria with Varied Physical-Chemical Properties |
In the present study, the therapeutic efficacy of five different antioxidant nanoparticles was tested in a PLP (proteolipid protein) model of multiple sclerosis. All of the antioxidant nanoparticles were constructed using a CeO2 core. However, each of the five antioxidants differed in the chemical groups present on the surface of the nanoparticle or in the specific synthetic method used. Of the four treatments tested, one model – WC87(12) – is a novel nanoparticle being developed and tested by a research team at St. Lawrence. The three competitor nanoparticles tested – Sigma Aldrich, Alfa Aesar-1:14 and Alfa Aesar-1:9 – were created by outside research groups. Motor function was tested using balance beam, hanging wire, and rotarod tasks. Clinical scores of disease severity were also compared between animals receiving different models of nanoceria. Animals receiving the WC87 (12) model showed markedly improved scores of motor function, and decreased scores of disease severity, when compared with all other treatment groups (Figure 1-4). These results suggest the physical-chemical properties of our novel nanoparticles provide increased efficacy compared to competitor models. |
Poster | view | 2012 | ||
| Chris Murphy | Cross-Domain Relationships and Their Effects on Athletes’ Responses to Injury and Motivation |
Cross-domain relationships (i.e., how well coaches and trainers know about non-sport aspects of athletes’ lives) predicted higher enjoyment, commitment, and perceived competence among athletes. While past research also examined how athletes’ perceptions of social support relate to responses to athletic injuries, none has observed the link between support for non-sport interests and activities and athletes' responses to injuries. Therefore, this study had three purposes: (1) to examine how athletes’ level of cross-domain relationships with head coaches, assistant coaches, and athletic trainers differ, (2) to examine how these relationships predict athletes’ responses to injuries, and (3) to examine how these relationships predict commitment, enjoyment, and perceived competence. Collegiate athletes (N = 296, 139 male, 157 female) participated in an online survey assessing cross-domain relationships, commitment, enjoyment, perceived competence, and response to injury. Levels of cross-domain relationships with head coaches and assistant coaches showed no significant difference, but both were significantly higher than levels of cross-domain relationships with athletic trainers. Regression analyses showed that cross-domain relationships with assistant coaches (and severity of injury) significantly predicted better response to injury, while cross-domain relationships with head coaches and athletic trainers were not predictive. Regression analyses also revealed that cross domain relationships with head coaches predicted higher perceived competence, commitment, and enjoyment, while social interactions concerning out-of-sport content with assistant coaches and athletic trainers did not. This shows that while relationships with head coaches predict high levels of general motivation in sport, relationships with assistant coaches predict more positive responses to injury. |
Senior Year Experience - Non Honors | Poster | Psychology | view | 2012 |
| Ellie Nedry | Body and Self-Esteem in Males: An Implicit and Explicit Approach to the Effects of Media |
Research has shown that exposure to idealized female body images lowers global self-esteem and increases body dissatisfaction in women (e.g., Grossbard, Lee, Neighbors, & Larimer, 2008). However, there is a lack of research on how idealized body images affect men. In the few studies that have been conducted with men, results are mixed. Men do show slight increases in body dissatisfaction after viewing idealized male body images, but they do NOT report lower global self-esteem (Hobza, Walker, Yakushko, & Peugh, 2007). Based on research that suggests men are unwilling to report insecurities, we believe that, like women, men do suffer from a reduction in global self-esteem but are just unwilling to report it. It was hypothesized that after viewing idealized body images implicit measures, but not self-report measures, would reveal that men feel less positive about themselves. As expected, our analysis revealed that both men and women experienced a significant decrease in implicit global self-esteem after viewing ideal body images. Surprisingly, explicit self-esteem scores increased after exposure to idealized images if it was completed immediately after exposure. If it was completed after the implicit measures, however, self-esteem showed the expected decrease. These results suggest that the increasingly idealized body imagery in advertisements attenuates self-esteem for both men and women, which may help to explain the increasing prevalence of steroid use, eating disorders, and cosmetic surgery among men in recent years. |
Senior Year Experience - Honors | Poster | Psychology | view | 2012 |
| Matthias Nevins | Spatial Analysis and Conservation Planning in St. Lawrence County, NY: Establishing open space conservation priorities for the St. Lawrence Land Trust and the use of GIS modeling. |
Open space conservation priorities were established for the St. Lawrence Land Trust through the utilization of spatial analysis and GIS modeling. Spatial analysis has enabled us to highlight properties along the five major waterways within the St. Lawrence River watershed that exhibit high potential for open space conservation. Given the Trust’s charge to promote and protect the ecological, recreational, historical, and cultural value of private properties within the St. Lawrence River watershed and enable local communities to steward their land in a manner that promotes the long term sustainability of their ecosystems and economies, we believe our model will help promote effective long term planning in the region. Properties were recognized for their high conservation value based on the national Land Trust Alliance standards and project selection criteria. These criteria were implemented by utilizing spatial data that highlighted existing land use and land cover type, proximity to protected areas and scenic waterways, and wetland abundance. The GIS model developed for this project will not only act to improve long-term conservation planning for the St. Lawrence Trust but it will also enable local residents and town governments to further understand their existing assets and enable them to steward the land in an effective manner. Keywords: GIS modeling, open space conservation, St. Lawrence Land Trust. |
Independent Study | Poster | Conservation Biology | view | 2012 |
| Kirsten Newton | Graphical Degree Sequences with a Unique Triple |
In the study of Graph Theory it is commonly known that in order for a degree sequence to be graphical, it must contain at least one repeated degree. Expanding on this fact, Daniel Gagliardi and Marty Lewinter analyze the properties of a degree sequence containing a unique pair in their paper, "A Survey of Undergraduate Research in Graphical Sequences". In a similar fashion, we will prove that there exists and infinite class of graphical degree sequences containing a unique triple. We analyze some of the properties of such graphs and provide and algorithm for determining where the degree sequences are graphical. |
Senior Year Experience - Honors | Poster | Mathematics | view | 2012 |
| Elizabeth Nichols | Physiological and Cognitive Changes at High Altitude: Hikers on Mt. Kilimanjaro, Tanzania (5985m) |
As altitude increases, pressure changes affect blood flow and oxygen availability to the brain. These changes cause many alterations in the brain, and if not given attention, may have negative consequences such as Acute Mountain Sickness (AMS), High Altitude Pulmonary Edema (HAPE), or High Altitude Cerebral Edema (HACE). Educated climbers often find ways to avoid or adequately treat these problems, yet the brain is still in an altered condition at very high altitude (above 3,500m), changing cognitive and physiological processes. These changes were monitored in climbers during an ascent of Mt. Kilimanjaro through self- evaluated surveys (n=6) related to altitude symptoms and blood oxygen levels at multiple altitudes. At very high altitude, there were significant decreases in blood oxygen levels (6.14%) and appetite (22.14%) while there were significant increases in sleeplessness and fatigue (21.98%). Acclimatization was most apparent in cognitive processes such as focus and “state of flow.” Although many factors affect a hiker’s physical and mental experience while hiking at high altitudes, by evaluating distinctive variation in our cognitive and physiological processing abilities at high altitude we can better prepare climbers for the effects of very high altitudes allowing better judgment, choices, and opportunities for climbers at high altitude. |
Course Project | Poster | view | 2012 | |
| McKayla Nuffer | The Art of Path Counting |
To continue exploring the art of path counting, I propose to count the number of paths through networks created by a row of adjacent square tiles with a diagonal placed within the center of each. The diagonals either go up or down within the squares. Using various combinations of tiles and counting the paths from the top left corner (A) to bottom right (B) of the networks, we determined whether there were any patterns or similarities based on the order of the tiles, and the number of down diagonal versus up diagonal tiles. I wanted to examine the networks when varying the direction within the network, allowing all the vertical edges within the tiles to go both up and down. This was in order to explore the effects in the change of the original guidelines on the number of pathways within the networks. I also examined networks within these same guidelines, involving not just one row of adjacent tiles, but having the number of tiles extend both horizontally and vertically creating n x k grids. I was able to create surprisingly simple formulas, generating systematic ways of counting the tile networks. |
Senior Year Experience - Non Honors | Poster | Mathematics | view | 2012 |
| Jaime O'Neill | Redesigning Persuasive Campaigns to Change Own Behaviors |
An experiment was conducted to understand how personal involvement, in the form of creating an advertising campaign, affects pro-environmental attitudes and behaviors. Prior to being asked to redesign an advertisement, a questionnaire was distributed to asses participants' current attitudes and behaviors regarding the environment. Participants then redesigned existing campaigns intended to increase the use of reusable mugs or decrease drinking and driving (control group). The same questionnaires were filled out approximately 1-2 weeks after the experiment. A significant interaction was found between participation in the ad campaign and respondent class year. Responses by sophomores (class of 2014) indicated significantly more environmentally responsible behaviors after participating in the reusable mug campaign. Conversely, responses by first year students (class of 2015) demonstrated significantly fewer environmentally responsible behaviors. These findings support previous research that indicated that first year students are least likely to demonstrate pro-environmental behaviors. Moreover, it appears that brief personal involvement with environmental issues does not increase these values for first year students, suggesting these values may be particularly intractable to persuasion techniques. |
Senior Year Experience - Honors | Poster | Environmental Studies | view | 2012 |
| Amelia Oates | Sequence Stratigraphy and Oxygen-Carbon Isotope Signal from Albian Platform-Interior Carbonates, Southern Croatia |
The Albian succession of Adriatic platform in southern Croatia is an overall shallowing upward supersequence reaching more than 400 meters. Based on detailed bed-by-bed analysis of two sections (Korcula and Mljet Islands), the supersequence contains four large, 20 to 210-m-thick third order sequences. The sequences are composed of highly cyclic peritidal carbonate facies and bounded by emergence breccias. These meter-scale shallowing-upward cycles consist of eight distinct lithologies from deepest to shallowest: (a) skeletal lime mudstone, locally burrowed, with clams and oncoids;(b) pellet-skeletal wackestone;(c) peloid-skeletal-intraclast wacke-packstone with rudists and gastropods;(d) intraclast-peloid-skeletal grainstone;(e) gastropod-rudist-oncoid floatstone to rudstone with lime mudstone, skeletal-peloid, or coarse dolomite matrix;(f) barren lime mudstone;(e) fenestral laminite;(d) emergence breccias represented by intra/lithoclast floatstone-rudstone or dolomite. |
Senior Year Experience - Honors | Oral Presentation | Geology | view | 2012 |
| Emma Obernesser | Using Bayesian statistics to identify potential predictors of Alzheimer's Disease |
How does having a family history of dementia affect your chances of being diagnosed with Alzheimer’s disease? Are males or females more likely to get Alzheimer’s? Data provided by the National Alzheimer’s Coordinating Center can be used to answer these questions as well as identify other potential predictors of Alzheimer’s disease. Using Bayesian binary and multinomial logistic regression, we investigate models for predicting the probability of Alzheimer's disease and discuss variables that can be potential predictors of Alzheimer's disease. |
Senior Year Experience - Non Honors | Poster | Mathematics | view | 2012 |
| Kathryn Olds | Creativity and Intelligence: Effects of Hormonal Fluctuations Associated with the Menstrual Cycle |
Creativity is defined as the combination of convergent (e.g., condensing) and divergent (e.g., expanding) thinking. The few studies that have examined how creative thinking is affected by ovarian hormones suggest that divergent thinking improves when estrogen is high. The present study examined the effects of hormonal fluctuations in the menstrual cycle on convergent and divergent thinking and intelligence. Eighty healthy undergraduate women, 40 naturally cycling (NC) and 40 oral hormonal contraceptive (OC) users, completed the Remote Associates Task (a test of convergent thinking) in which participants are presented with a set of words and asked to generate the word that connects them, and the Alternative Uses Task (a test of divergent thinking), in which participants are asked to generate as many possible uses for common items. The Shipley-2 test assessed crystallized intelligence (with a vocabulary test) and fluid intelligence (with a spatial block designs task). Saliva samples were collected and assayed for estrogen (E) and progesterone (P). Comparisons were made between NCs and OCs participants across the menses, late-follicular, and mid-luteal phases of the menstrual cycle. Preliminary results show that although creativity was not influenced by menstrual phase, significantly higher fluid intelligence was observed for NC over OCs during menses, when E and P are low, and the late follicular phase when E is high. |
Senior Year Experience - Honors | Poster | Neuroscience | view | 2012 |
| Matt Parker | Evaluating the Brooks Kaiser Hypothesis: The Biological Validity of Agriculturally Induced Monogamy in Humans |
A proposed theory of economics has suggested that agriculturally based externalities around the time of the Neolithic revolution, specifically prolonged contact with dairy agriculture, and ingestion of certain phytoestrogens (soy), increased levels of hormones responsible for facilitating pair bonding. This increase in pair bonding hormones (oxytocin) led to an increased institutionalization of monogamy, despite the economic preference for polygyny in agricultural societies. The purpose of the present study was to explore the biological validity of this hypothesis through vigorous analysis of primary literature. The research shows that if the effects of these agriculturally based externalities are estrogenic, and do in fact increase pair bonding hormones, the neuroanatomy, behavioral neuroendocrinology and biochemistry based evidence support a behavioral preference for monogamous pair bonding. However, insufficient experimental evidence exists to support this dairy agriculture induced oxytocin release in humans, and the literature on phytoestrogen’s centrally based effects is contradictory. This study proposes a series of two separate experiments that could be conducted to clarify inconsistencies in the literature. The first study would consist of human participants sustaining prolonged contact with dairy agriculture, then measure intracerebral fluid (ICF) levels of oxytocin. The second study would involve monogamous and non-monogamous voles being fed phytoestrogen rich diets to measure its behavioral effects as well as ICF oxytocin. Clarifying these two uncertainties in the current literature would either concisely refute or support the hypothesis proposed. |
Senior Year Experience - Non Honors | Poster | Biology | view | 2012 |
| Molly Parren | Draft of Vermont State Recovery Plan for Endangered Spotted Turtle "Clemmys guttata" |
The premise of this project is to create a framework for the Vermont state recovery plan for Spotted Turtles (Clemmys guttata). This is an endangered species in Vermont that is only known from three locations within the state. This past summer I spent a month trying to trap these turtles in the most recently discovered location in order to establish the population’s size and distribution as a means to better know how to protect it. This research is still ongoing, but I am writing a draft of the recovery plan so that there is a framework with which to work as more information is discovered about these populations in Vermont, what threatens them, and what can be done. This draft plan is being written for Vermont Fish and Wildlife Department, Wildlife Diversity Program, and as such will be put into action after an extended review process. It typically takes two years for these plans to be drafted and reviewed, so my current work is the beginning of a longer process. I plan to do more trapping this summer as an intern for Vermont Fish and Wildlife Department, Wildlife Diversity Program, while also continuing my work on the recovery plan as more is discovered about these populations. The work I am doing for this SYE is by no means complete but is a necessary starting point from which to develop important conservation management plans that will be acted upon by the Vermont state agency in charge of threatened species management. |
Senior Year Experience - Non Honors | Poster | Conservation Biology | view | 2012 |
| Thomas Pasquali | An analyisis of NHL faceoffs |
Hockey is a very fast paced game, which makes it hard to analyze stats. Unlike baseball and football there is no start and stop at plays making it hard to know what you are looking for when analyzing. However hockey is known to be a game of possession and when there is a stoppage in play there is then a faceoff where there is a 50-50 chance of who will win the faceoff and gain possession. Or is there? The purpose of my project was to analyze faceoffs in hockey for all players in the NHL and try to effectively rank the players in the NHL. By doing this and calculating the probability that a faceoff leads to a goal it can then be calculated the expected number of goals a 48% faceoff leader will give you when compared to a 53% faceoff winner. We have also analyzed the effects of the location of the faceoff, strength of both teams and whether a player is home or away when determining the probability of winning a faceoff. Using the data obtained as well as the expected value of a goal after a faceoff under different situations we can determine the expected number of goals a team has generated through faceoffs and ultimately determine the value of a faceoff. |
Senior Year Experience - Honors | Poster | Mathematics | view | 2012 |
| Kelly Prime | Effects of Cerium Oxide Nanoparticles in MOG-induced Experimental Autoimmune Encephalomyelitis |
Radical oxygen species (ROS) are continually produced via normal cellular metabolism, but levels can increase dramatically as a result of disease. While increasing evidence suggests a role for ROS in maintenance of REDOX state, an important element in cellular signaling, they can also induce oxidative injury. This damage stems from the presence of unpaired electrons, which augment ROS reactivity, allowing them to strip electrons from vital cellular components. The body possesses a number of defense mechanisms that keep base level ROS exposure in check, but when ROS generation overwhelms endogenous antioxidant systems, or when these systems are compromised, cellular damage results. This disruption of balance between ROS production and elimination forms the basis of numerous neurodegenerative disorders. One such disease, Multiple Sclerosis (MS), is characterized by severe, progressive physical and cognitive disability, resulting from inflammation and demyelination within the central nervous system (CNS). This damage can be traced back, in part, to macrophage ROS production. Since auto-defense mechanisms against free radical damage are insufficient to combat the ROS-induced injury in MS, exogenous ROS scavengers could conceivably lessen oxidative stress within the CNS. In this study we demonstrate the efficacy of systemically delivered ceria oxide nanoparticles in decreasing clinical severity, and preserving motor function, in a mouse model of MS (experimental autoimmune encephalomyelitis, EAE). We also show, through inductively-coupled plasma mass spectronomy (ICP-MS), that ceria retention is greater in the brain than in the liver. These promising results speak to the potential therapeutic value of cerium oxide nanoparticles in treating MS. |
Senior Year Experience - Honors | Poster | Neuroscience | view | 2012 |
| Lalita Priyamvada | The estrogen-disrupting compounds bisphenol-A (BPA) and atrazine inhibit thymus gland growth in amphibian (Xenopus laevis) tadpoles |
Bisphenol A (BPA), a polycarbonate in the plastic industry, and the herbicide atrazine possess the ability to up-regulate estrogen levels in the body. The effects of BPA and atrazine have not yet been studied in great detail in amphibian systems; however studies in rodent models have revealed dangerous reproductive defects in animals exposed to these endocrine disrupters. The up-regulation of estrogen, as mediated by these chemicals, can be particularly harmful to the immune system. Studies conducted in mice have shown that high levels of estrogen induce atrophy of the thymus. While BPA binds directly to nuclear estrogen receptors (ERs), atrazine indirectly induces the estrogen pathway by activating the cytochrome p450 aromatase enzyme converting testosterone to estrogen. The focus of this project was to study the effects of BPA and atrazine on amphibian immunity; specifically how chemical exposure affects the development of the thymus in pre-metamorphic animals. Estradiol (estrogen) treatment of N.F. stage 50 Xenopus laevis tadpoles and triggered a significant decrease in thymus size. Experiments using BPA (10 uM) and atrazine (200 uM) have shown to decrease thymus size of treated animals by 25% and 57.4% respectively. The effects of BPA on thymus size were fully recovered with treatment with an ER antagonist, fulvestrant. The effect of atrazine on thymus size was recovered by 10% with fulvestrant. These studies will provide a better understanding of the seemingly harmful effects of BPA and atrazine, already known to pollute water bodies, on amphibian immunity. |
Senior Year Experience - Honors | Poster | Biology | view | 2012 |
| Elle Rathbun | A Novel Treatment of Relapse-Remitting Multiple Sclerosis |
There is clear evidence that oxidative stress is an important factor in the onset and progression of multiple sclerosis. Oxidative stress is caused by the accumulation of reactive oxygen species (ROS), which destabilize and destroy constituents of the cell. Nanoceria is capable of scavenging a wide array of biologically important free radicals, suggesting it may have therapeutic value. It is the goal of the present study to test if cerium nanoparticles have the potential to reduce oxidative damage in a model of relapse remitting multiple sclerosis. Multiple sclerosis was modeled in mouse subjects through the induction of Experimental Autoimmune Encephalitis (EAE), which mimics the key symptoms of MS. In each model, there were three treatment groups; preventative, delayed suppression, and control. Mice received injections of nanoceria according to dosing schedule, and were tested repeatedly on the rotarod, hanging wire, and balance beam. These behavioral tests are commonly used to asses balance and strength in the hind limbs and forelimbs of the mouse. |
Senior Year Experience - Honors | Poster | Neuroscience | view | 2012 |
| Sarah Reynolds | Conservation and Sustainable Use of Mnemba Atoll Coral Reef in Zanzibar, Tanzania |
The purpose of my research was to determine stakeholder views on the environmental management of the coral reef ecosystem surrounding Mnemba Atoll in Zanzibar, Tanzania. For my Independent Research during the Kenya Semester Program in fall 2010 I met with and interviewed the main stakeholder groups who utilize and manage the area: local artisanal fishermen, a tourist industry marketed to international visitors who snorkel/ dive the Mnemba reefs, and the local government. Mnemba Atoll, once a very pristine, rich and vibrant reef, is now losing its biodiversity. Resource overutilization by tourists and local fishers, including an increase in the number of fishermen and the fishing intensity, as well as a lack of government aid or protection are the problems that have Mnemba on a downward spiral. Through my research and time spent in the field with the individuals involved, I have gained an understanding of how to analyze the sociological and biological issues that threaten the Mnemba ecosystem. As part of my SYE, I have extensively reviewed scientific articles on coastal management and stakeholder conflicts in developing counties. My research will culminate in a document that will examine current stakeholder issues affecting Mnemba Atoll, and contribute solutions gleaned from similar conflicts found in the coastal management literature. I plan to disseminate this manuscript to the local players in Zanzibar, as well as submit it to a marine conservation journal with my SYE advisor Susan Willson. |
Senior Year Experience - Non Honors | Poster | Biology | view | 2012 |
| Edward Richter | Ecology of Roadside Mosses |
With 6.3 million km of public roads in the United States, roughly 1% of the land surface is directly impacted by the presence of roads, making them one of the most prevalent features of the modern landscape. Mosses are widely and easily dispersed, high in abundance, sensitive to their microhabitat, and one of the few types of plants that are capable of growing in the highly disturbed areas along roadsides. We tested the hypothesis that mosses may be used to describe roadside soil chemical and physical conditions. Twenty-four locations of varying road types were sampled across central Vermont and New Hampshire, and Northern New York. Replicate plots were sampled at four distances from the road edge. Sample plots were measured for ground cover (soil, rock, litter, tree/shrub, herbaceous, graminoid, and cryptogams), soil physical characteristics (depth, hardness, and texture), and soil chemistry (pH, CEC, organic matter, N, P, K, S, B, Ca, Na, Mg, Fe, Zn, Cu, Mn, and Al). All species of moss occurring in the plots were collected and identified. Plot ground cover, soil chemical and physical measurements differed among the three states. Presence of moss colonies was significantly correlated with selected plot ground cover, soil chemical measurements, and distance from road edge. Moss species differed in their response to ground cover, soil physical measurements, and soil chemistry, suggesting that mosses may be useful indicators of roadside microenvironments. |
Senior Year Experience - Honors | Oral Presentation | Biology | view | 2012 |
| Emily Riley | Lower Incidence of Stress Injury in Female Athletes Engaged in High Impact Sports |
Women’s lifelong bone health is reliant on the peak bone mass attained during childhood and adolescence years, as well as subsequent bone loss acquired after young adulthood. During periods of growth, it is critical to maximize calcium and vitamin D consumption in order to promote optimal bone formation. Deficiencies in either dietary component can lead to increased bone turnover and therefore influence the susceptibility to bone injury, ricketts, or osteoporosis later in life. Many factors are also known to affect the rate of bone metabolism, including body mass index, other dietary components, and the level and intensity of physical activity. The purpose of this study was to investigate the effects of dietary and physical activity factors on bone health in female college athletes participating in basketball, field hockey, lacrosse, soccer, softball and volleyball at St. Lawrence University. An online survey was administered, which included a food frequency questionnaire to gauge calcium and vitamin D consumption. Questions regarding BMI, bone health, sun exposure, common playing surfaces, weight lifting and the intensity and length of physical activity were also self-reported. We found a significant difference in the prevalence of stress fractures between female sports teams (p= 0.023) as well as between high, intermediate and low impact sports (p= 0.011). Additionally, there was a significant difference in the number of self-reported stress fractures between athletes training on field turf, grass or gym floor (p= 0.016). The difference in BMI, weight-lifting (times/week), the length of training (hours/week), sun exposure and vitamin D consumption between athletes was insignificant in influencing the prevalence of stress fractures (p > 0.05). Our results suggest that playing surface influences the susceptibility to stress injury, with athletes participating in high impact sports that train on gym floor exhibiting a lower incidence of stress fractures. This suggests that athletes participating in intermediate and low impact sports that train on grass or field turf, are more susceptible to stress injuries. |
Senior Year Experience - Honors | Poster | Biology | view | 2012 |
| Jarell Roberts | YOU CANT CATCH ME!! |
There are a number of factors that can influence the outcome of a sporting event. During my four years on the St. Lawrence Track and Field team, I participated in meets that were held under different conditions and suffered injuries that affected my race times. I use Bayesian statistics to model my 200 meter event times and discussed the factors that influenced my race times. |
Senior Year Experience - Non Honors | Poster | Mathematics | view | 2012 |
| Joshua Roberts | Trail Counting |
We will discuss several counting problems throughout this paper. They all start with a basic path counting problem where a starting point A has n edges between it and an ending point B, in which the paths can move in either direction. To visualize this problem, assume we are counting the number of different hikes there are between lodges on a mountain: each node is a different lodge, and each path is a possible different hike between these lodges, with various trails connecting the lodges. There are many variations on such a simple problem that lead to some very interesting results that we will divulge later. One extension would be to include an additional point C in the network, creating a horizontal network with A connected to C and C to B. One could connect all three points to one another with one set of nodes being connected by a variable amount of edges. We will derive equations that count the total number of paths and even go into large examples such as a network with n = 20 edges, whose resulting value is far greater than most would ever believe. |
Senior Year Experience - Non Honors | Poster | Mathematics | view | 2012 |
| Kylie Rock | Methylmercury Uptake and Distribution in Metamorphosing Xenopus laevis Tadpoles Fed a Swordfish Diet |
Methylmercury (MeHg) is a toxic form of Hg known to bioaccumulate in organisms, particularly in aquatic wildlife. MeHg’s sub-lethal effects include neurotoxicity, endocrine disruption, and immune suppression. Although many studies have measured MeHg levels from wild vertebrates, few controlled laboratory studies on dietary MeHg uptake and tissue distribution have been conducted using amphibian models, partly due to the challenge of effectively administering MeHg. Here we describe a simple and effective method to elevate MeHg loads of lab-raised tadpoles (Niewkoop & Faber stages 54-57) to levels comparable to or higher than what has been reported in amphibians found in wetland environments known to contain high MeHg. Compared with controls fed a Pacific salmon diet low in MeHg, pre-metamorphic tadpole (NF 57) tissues were significantly elevated (average tail values: 0.29 vs. 2.20 ppm; average body values: 0.011 vs. 1.570 ppm). Tails from swordfish-fed tadpoles contained almost one-and-one-half times the MeHg concentrations found in the body, likely due to the high muscle content of the tail compared with the body. Interestingly, following either spontaneous metamorphosis or metamorphic induction with exogenous thyroid hormone treatment (30 nM thyroxine, 7 days beginning at NF 57) the concentration of MeHg in the body abruptly doubled, even though the tadpoles were not fed during this period. We attribute the rapid rise in body MeHg levels to transference from the resorbing tail. Therefore, metamorphosis may represent a critical period when tadpoles living in environments containing elevated MeHg are particularly susceptible to its toxic effects. |
Senior Year Experience - Honors | Oral Presentation | Biology | view | 2012 |
| Robert Romeo | Kick’em While They’re Up, Kick’em While They’re Down |
Imagine that you are an NFL field goal kicker and your team is down by 2 points and it is now 4th down and short. IF you make the field goal, your team wins, but if you miss, your team will lose the game. In the NFL AFC championship game, the Baltimore Raven’s kicker Billy Cundiff was in such a situation; he missed a 32 yard field goal that would have tied the game and taken them into overtime. Everyone always blames the field goal kicker if they miss a field goal, even though they are under a lot of pressure. In this project we investigate the role pressure has in terms of affecting how likely it is that a person will make or miss a field goal. We will be using a Bayesian hierarchical logistic regression model to determine how much of a role pressure has when attempting a field goal in the NFL. We are using kick by kick data from the 2011-2012 NFL regular season, and some of the potential predictors include the length of the field goal, the point differential at the time prior to the attempt, the quarter and down the kick was attempted. |
Senior Year Experience - Honors | Poster | Mathematics | view | 2012 |
| Ryan Ross | The Metabolic Diversity of Sulfate Reducing Bacteria Found Within the Artificial Wetland |
Sulfate reducing bacteria are anaerobic microorganisms that use sulfur in the absence of oxygen for respiration. These bacteria reduce sulfate and produce hydrogen sulfide. While the mechanism of sulfate reduction has been studied greatly, the diversity of sulfate reducers is not completely understood and represents a number of distantly related phylogenetic groups. Additionally, the organic substrates that can be added to enhance sulfate reduction have not been completely discovered. |
Senior Year Experience - Non Honors | Poster | Biology | view | 2012 |
| Kathryn Seyfarth | Personality, planning and happiness: A correlational study |
The study examines the correlations between the Big Five personality traits, planning strategies, happiness, and stress across 279 St. Lawrence students. Participants voluntarily elected to take the 5 surveys via SurveyMonkey. Planning scores were categorized into preparatory and implemental planning, where preparatory planning involved more general goal setting and implemental planning involved detailed specification of the path to the goal, such as where, when and how an action will be performed. Based on previous research, hypotheses predict that, first, stress scores will correlate negatively with happiness. Research has shown that while a variety of factors may play into the relationship, there is an inverse relationship between stress and happiness. Second, stress scores will correlate positively with both preparatory and implemental planning. Research has shown that when stress in students starts to become excessive, they turn to a variety of strategies, including effective time management and planning skills, to help alleviate that stress. Third, scores on neuroticism or extraversion will correlate positively with measures of implemental planning. Lastly, scores on conscientiousness will correlate positively with measures of both implemental and preparatory planning. Research indicates that based on a new theory on the biological basis of the Big Five, each trait is associated with the volume of a different brain region, therefore, the last 2 hypotheses should hold true. Analysis of the results is still pending. Keywords: personality, preparatory planning, implemental planning, happiness |
Senior Year Experience - Honors | Poster | Psychology | view | 2012 |
| Garrett Sharlow | St. Lawrence University Men’s Basketball Keys for Success |
Basketball is a game of runs, not only for your team but also your opponent. Sometimes basketball games are “blowouts”; other times they may be decided in the final possession. But do you know what really wins a basketball game? For this project, we consider different aspects of the game of basketball that can help predict point spread, and thus wins and losses between the two teams in a contest. The predictors we chose are easily found in the game’s box score. Using this season’s data, we investigate Bayesian models to predict the outcome of a basketball game and identify predictors that have the greatest impact on the outcome. |
Senior Year Experience - Non Honors | Poster | Mathematics | view | 2012 |
| Erin Siracusa | Assessing the impact of North American porcupine (Erethizon dorsatum) foraging on forest composition and structure in northern New York |
Herbivores have the potential to profoundly affect the vegetation on which they feed, causing shifts in abundance and distribution of plant species. Foraging behavior of the North American porcupine (Erethizon dorsatum) is of interest because winter feeding strategies may cause lethal damage to trees. This study assessed the impact of winter foraging behavior of porcupines on forest composition and structure. Between October 2011 and February 2012, I established four survey plots; two den plots and two random plots within Glenmeal State Forest in Canton, New York. In each I identified all trees to species, measured their diameter at breast height and assigned a wound score to quantify damage from porcupine feeding. Forest composition appeared very different between den and random plots. Den plots had a lower density of adult trees and a higher density of saplings and snags than random plots. The densities of two subdominant species were also much higher at den than random plots. Although observational studies have suggested that porcupines structure communities through preferential feeding, preliminary data from this study suggests that porcupine selection of tree species tends toward more generalist feeding behavior, facilitating the growth of multiple species and potentially increasing the diversity of forest communities at den sites over time. Porcupine foraging creates patches of small-scale disturbance that facilitate succession and new growth. A larger sample size is needed to confirm these trends and to further our understanding of the extent to which porcupines serve as agents of disturbance and renewal in the hardwood forests of northern New York. |
Senior Year Experience - Honors | Poster | Biology | view | 2012 |
| Andrew Skaggs | New Zealand Biogeography, Natural History, and the Ecological Consequences of Invasive Species |
Conservation and invasive species eradication in New Zealand has become an increasingly important issue due to a variety of biogeographic, natural history, and anthropogenic factors. New Zealand is an archipelago island nation located in the South Pacific 1500 km east of Australia between 34˚S and 47˚S, and was the last major landmass to be colonized by humans. The three main islands, with a total land area of approximately 270,000 km2, became separated from the supercontinent Gondwanaland 60-80 million years ago. This extraordinary geologic and ecologic isolation, coupled with significant climatic variation has contributed to immense diversification of unique native and endemic wildlife. Only two terrestrial mammals, which were bats, existed prior to human settlement. Ratites, an ancient lineage of flightless bird flourished, and the Tuatara whose ancestors evolved 200 million years ago remains as a living reptilian fossil. Upon the arrival of the Māori between 700-1000 years ago, drastic environmental change occurred as hunting, agriculture, and selective burning transformed the landscape. European settlers arrived in the late 18th century and further changed New Zealand through extensive hunting, resource extraction, warfare, and invasive species introduction. Invasive species management has become a national conservation priority; with support from the scientific community and government agencies, the nation is attempting to eliminate invasive pests, restore endemic species, and maintain functional ecological communities. |
Senior Year Experience - Non Honors | Poster | Conservation Biology | view | 2012 |
| Daniel Sprague | Hormones and the Emotional Mind: The role of estrogen and progesterone in the processing of emotional content |
Hormones and the Emotional Mind: The role of estrogen and progesterone in the processing of emotional content. The present study investigated the effects of hormonal fluctuations associated with the phases of the menstrual cycle (menses, late-follicular, and mid-luteal) on emotional processing as measured by participants’ logical reasoning, memory, and perception of emotive value for arousing, emotional content. Healthy undergraduate heterosexual women that were either naturally-cycling or using oral contraceptives (approximately 40 per group) completed a logical reasoning task in which they had to deduce the validity of conditional statements containing either emotional or neutral stimuli. In addition, participants rated emotional as well as neutral words and pictures on arousal (intensity) and valence (pleasantness), and then completed memory recall tasks. At the end of the testing session, saliva samples were collected and assayed for estrogen and progesterone levels. The results examined the association between hormone levels across phases of menstrual cycle and performance on emotional memory and reasoning tasks. |
Senior Year Experience - Honors | Poster | Psychology | view | 2012 |
| Lauren Stemler | Paradigms in Path Counting |
Path counting can be described as finding the number of ways to trace a route between two points A and B in a network. In this poster, we will discuss a “bow-tie” network and several variations, such as restricting the direction one can move within the network or adding additional edges. Our focus will be on counting the number of possible paths, explaining why these values arise by using recursions and generating functions, and understanding some of the interesting results. For example, in one network we have a recursion that allows us to compute the number of paths based on previous values. From this, we are able to find a closed-form expression for the number of paths through the network to easily find the answer for any size network. This process that was completed for many different networks, most notably the “Pascal’s Bow-Tie” network. This noteworthy network led to unexpected results with values we will call “Central Pascal Numbers” and well-known Central Delannoy Numbers, the details of which will be included in this poster presentation. |
Senior Year Experience - Non Honors | Poster | Mathematics | view | 2012 |
| Silas Streeter | Path Counting: From Fibonacci to Schroeder |
We begin by counting the number of paths through a certain network of triangles, a familiar example which leads to Fibonacci numbers. We then consider an extension of this network obtained by adding another row of alternating triangles beneath the first. We will highlight and then explain a curious pattern discovered in which the number of paths to vertices along the top row is always one greater than those to vertices along the bottom row. Finally, we study the effect of including arbitrarily many rows of triangles beneath the top row. The resulting series of numbers along the top of the network are titled Large Schroeder Numbers. A clever path classification system provides a means of determining the next number in the series if all the previous numbers are known. |
Senior Year Experience - Non Honors | Poster | Mathematics | view | 2012 |
| Erika Swits | The Effect of Peppermint and Sandalwood Odors Prior to Aerobic Activity |
Previous research has shown that continuous exposure to some odorants can affect cognitive ability, athletic performance, pain threshold, alertness, mood and workload. The present study aimed at exploring whether smelling peppermint and sandalwood odors prior to exercise could yield similar performance enhancing effects. It was hypothesized that prior exposure to peppermint and sandalwood would yield an increase in pedaling rate accompanied by an increase in heart rate, thereby improving the efficiency of the athlete. Members of the St. Lawrence University Women’s Varsity Field Hockey Team were the subjects for this experiment. Subjects were exposed to an odorless control, sandalwood, or peppermint oil-infused gauze pad for two minutes prior to the start of 20 minute stationary bike trials. The results showed that prior exposure to peppermint significantly enhanced efficiency (RPM/HR), whereas prior exposure to sandalwood significantly decreased efficiency. The efficiency of the athletes was correlated with the expected graduate year of the athlete, position on the field, and whether the athlete started. The senior class athletes were significantly more efficient than the other women. However when the senior athletes were retested three months after the season ended, their efficiency decreased and they responded more like the other athletes. In summary, prior exposure to peppermint significantly enhanced aerobic performance whereas prior exposure to sandalwood had a negative effect on performance. |
Senior Year Experience - Non Honors | Poster | Biology | view | 2012 |
| Jordyn Thiem | Correlations among Food Intake, Activity Level, and Body Image Perceptions in College Students |
There have been numerous studies conducted to investigate college students’ lifestyle choices and the influences that determine how they come to make them. Many studies have found that personal body image, as well as peer pressure, have a large influence on the individual in determining what choices they will make in regards to food/diet, exercise habits, etc. In this study, data was collected anonymously from St. Lawrence University students by use of a survey website and analyzed to determine possible correlations between academic major, nutritional knowledge/background, individuals’ lifestyle choices, and personal body image. Individuals’ body mass index (BMI) values were also calculated in order to compare actual body weight status to perceived body weight. The results of our study showed that 72.6% of individuals participating in the survey perceived their weight status accurately. We also found that 55% of respondents are utilizing some kind of weight loss strategy, including commercial programs such as Weight Watchers, and weight loss pills and supplements. Interestingly there was also a significant difference in the way in which individuals described their own weight status and body image depending on their academic major. A significant difference was also found between males and females, as well as between different academic majors, in the frequency in which individuals exercise within a given week. Overall, our results support the notion that women are more body conscious than men and that factors associated with choice of academic major also influence body image and health behaviors. |
Senior Year Experience - Non Honors | Poster | Biology | view | 2012 |
| Andrew Twitchell | AN OPEN SOURCE, 3-D MODEL OF KILIMANJARO GLACIER EXTENT |
Kilimanjaro, the tallest mountain in Africa, is one of the few locations in the equatorial zone where glaciers exist. Not unlike the Quaternary tropical glaciations of Irian Jaya in Indonesia, the glaciers atop Kilimanjaro are in a state of disequilibrium. Approximately 6000m above sea level and always well below zero degrees Celsius, records from 1912 to present provide evidence of constant retreat. Two-dimensional visualizations are plentiful, yet there are no three-dimensional (3D), open-source data representations of glacier loss. Modeling the ice extent in 3D offers a novel way to present and preserve these data. Compilation and manipulation of current co-ordinate data provide calculable control points for 3D ice-reconstruction model overlays. These indicate prior ice sheet locations as well as current rendering of hypothetical future distribution through 2050. Kilimanjaro region’s mean annual temperature is suggested to rise 1.3oC to 2.2 oC over the next 100 years. The public still use this predicted temperature increase as the reason for glacier loss. This is not the case; the Equilibrium Line Altitude (ELA), or freeze line, of Kilimanjaro is at ~4,500 meters. The substantive height of the mountain negates the overwhelming belief that the ice is retreating due to temperature increase, but primarily due to sublimation. 3D open-source representation can be applied in the classroom environment or for trekkers interested in dimensional cartography. In the scientific community, 3D rendering of different glacial extent over time, is a novel tool to view glaciers in retreat. |
Course Project | Poster | Geology | view | 2012 |
| Brent Underwood | How Do You Like Them Apples: The Math of Good Will Hunting |
Questions in combinatorics usually ask one to determine the number of paths from point A to point B, but what if, instead of simply counting the number of paths in an existing network, we create the network in order to maximize the number of paths. In this paper we will describe the general method for determining the number of paths of length n connecting two arbitrary vertices of a graph. We will then prove that for any graph with v vertices and e edges and for any value of n, the total number of paths of length n between arbitrary vertices is maximized when a single vertex connects to every other vertex either one time or e-(v-2) times. This means that every vertex connects to a central point and that all the remaining edges are drawn between the central vertex and one other vertex. |
Poster | view | 2012 | ||
| Meredith Wilkes | Enteric Neuronal Development During Metamorphic Gut Remodeling |
X. laevis tadpoles undergo metamorphosis as a part of their normal development. Laboratories utilize this frog species because the development of their enteric system is similar to that of humans. Before metamorphosis, intestines are long and thin, and during metamorphosis, they become thick and 70% shorter. The same thing happens with neurons; they are long and thin before metamorphosis, and during metamorphosis they become thicker and more branched. Six tadpoles were treated with T3 (the active form of Thyroid Hormone) for three days, and a control group of six tadpoles were not exposed to T3. The tadpoles were dissected and the muscle and neurons of the intestines were stained and imaged on the confocal microscope. Image J was used to analyze the neuronal length, width, and branching to show that there is a significant difference between pre-metamorphic tadpole intestines and post-metamorphic tadpole intestines. |
Senior Year Experience - Non Honors | Poster | Biology | view | 2012 |
| Greg Wolfe | Diversity of Microbial Community Based on Functional Genes in Fayetteville Green Lake, NY |
Green Lake is a meromictic lake located in Fayetteville, New York; as such it offers a unique stratification of microbes within its water column. This survey of the microbial community in Green Lake particularly focused on the presence of significant geochemical processes, such as ammonia oxidation which is the rate limiting step in nitrification, or the conversion of ammonia into nitrite, and an important step of the nitrogen cycle. We also focused on methanogenesis, and methanotropy, these processes relate to the metabolic formation and oxidation of methane. Methanogenesis acts as the final process in the decomposition of biomass, while methanotropic processes are of interest for their implications with climate change. Previous surveys of Green Lake’s geochemistry revealed the presence of methane within the water column, and an unexplained drop in ammonia near the oxycline. In this investigation, we attempted to identify the microbes responsible for variations in the geochemistry of Green Lake based on the characterization of several key functional genes. Functional gene analysis is useful in identifying microbes responsible for specific biological processes by targeting conserved DNA sequences responsible for the coding of specific proteins unique to the metabolic processes in question. We aimed to identify the presence of ammonia monooxygenase gene, an indicator of ammonia oxidation, along with the alpha-subunit of the particulate methane monooxygenase, for methanotrophy, and the alpha-subunit of the methyl-coenzyme M reductase, for methanogenesis. In conjunction, we utilized nested polymerase chain reactions to identify the presence of relevant nitrifying bacterial genera. |
Senior Year Experience - Non Honors | Poster | Biology | view | 2012 |